Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq94522 107 2e-18 seq105140 98.7 8e-16 seq99508 96.9 3e-15 seq99507 96.9 3e-15 seq99506 96.9 3e-15 seq107474 91.5 1e-13 >seq94522 Length=3036 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| ||||||||||||||||| ||| ||||| || || Sbjct 1015 ATGCAAATCTTTGTAAAAACTTTGACTGGCAAGACCATCACCTTGGAAGTGGAGTCCTCT 1074 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || ||| | | | || || || || ||| ||||| |||||| | ||| ||| || Sbjct 1075 GACTCTATCGAGAACGTTAAGCAGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAG 1134 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| ||||| || | || || | ||| ||| ||| |||||| Sbjct 1135 CAGCGCCTCATCTTTGCAGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCCGACTACAAC 1194 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATAAT 106491 || ||||| || || || || || || || | ||||| || |||||| ||| Sbjct 1195 ATCCAAAAGGAGTCCACCCTTCACTTGGTGCTCAGGTTGCGTGGAGGACAAT 1246 >seq105140 Length=834 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| || |||||||||||||||||||| ||| |||| || || Sbjct 2 ATGCAAATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTGGAGTCCTCT 61 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || ||| ||| | ||||| || || || |||||||| ||| | || |||||| Sbjct 62 GACTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 121 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| || || || | || ||| | || ||| ||| |||||| Sbjct 122 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCCGACTACAAC 181 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || |||||||| ||||| || || || || Sbjct 182 ATCCAAAAAGAGTCTACTCTCCACTTGGT 210 >seq99508 Length=2583 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 || ||||||||| || || || ||| ||||||| |||||||||||| | || ||| | Sbjct 1869 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 1928 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 | || ||| ||| | || || ||||| || ||||| |||||| | ||| ||| Sbjct 1929 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 1988 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| || | || || | ||| ||||| || | || ||| | ||| ||| ||| || Sbjct 1989 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 2048 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGT 106468 ||| || ||||| || ||||| || || || || Sbjct 2049 CAATATTCAAAAGGAGTCTACCCTCCACTTGGT 2081 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || ||| ||||||||||||| |||||| | ||| || || Sbjct 2101 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 2160 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 |||||| ||| | || || || || ||| ||||| |||||| | || |||||| Sbjct 2161 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 2220 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| ||||| || |||||||| || ||| ||| |||||| Sbjct 2221 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 2280 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || |||||||| || || || || Sbjct 2281 ATCCAAAAAGAGTCCACCCTTCA 2303 >seq99507 Length=2862 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 || ||||||||| || || || ||| ||||||| |||||||||||| | || ||| | Sbjct 1869 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 1928 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 | || ||| ||| | || || ||||| || ||||| |||||| | ||| ||| Sbjct 1929 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 1988 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| || | || || | ||| ||||| || | || ||| | ||| ||| ||| || Sbjct 1989 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 2048 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGT 106468 ||| || ||||| || ||||| || || || || Sbjct 2049 CAATATTCAAAAGGAGTCTACCCTCCACTTGGT 2081 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || ||| ||||||||||||| |||||| | ||| || || Sbjct 2101 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 2160 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 |||||| ||| | || || || || ||| ||||| |||||| | || |||||| Sbjct 2161 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 2220 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| ||||| || |||||||| || ||| ||| |||||| Sbjct 2221 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 2280 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || |||||||| || || || || Sbjct 2281 ATCCAAAAAGAGTCCACCCTTCA 2303 >seq99506 Length=3388 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 || ||||||||| || || || ||| ||||||| |||||||||||| | || ||| | Sbjct 567 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 508 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 | || ||| ||| | || || ||||| || ||||| |||||| | ||| ||| Sbjct 507 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 448 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| || | || || | ||| ||||| || | || ||| | ||| ||| ||| || Sbjct 447 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 388 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGT 106468 ||| || ||||| || ||||| || || || || Sbjct 387 CAATATTCAAAAGGAGTCTACCCTCCACTTGGT 355 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || ||| ||||||||||||| |||||| | ||| || || Sbjct 335 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 276 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 |||||| ||| | || || || || ||| ||||| |||||| | || |||||| Sbjct 275 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 216 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| ||||| || |||||||| || ||| ||| |||||| Sbjct 215 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 156 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || |||||||| || || || || Sbjct 155 ATCCAAAAAGAGTCCACCCTTCA 133 >seq107474 Length=3350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| || || ||||||||||||||||| ||| | || ||| || Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||||| ||| | || || ||||| || |||||||| ||| | ||| |||||| Sbjct 2044 TGATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 2103 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | || || | || ||||| || | || ||| || ||| ||||||||| Sbjct 2104 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACAA 2163 Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468 ||| ||||| || ||||| || || || || Sbjct 2164 CATTCAAAAGGAGTCTACTCTTCACTTGGT 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401801436034112