Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq104633 255 8e-63 seq99766 255 8e-63 seq99765 255 8e-63 seq105396 178 2e-39 seq96527 102 1e-16 >seq104633 Length=6721 Score = 255 bits (282), Expect = 8e-63 Identities = 419/600 (70%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| ||||| |||||||||||||| || || || || || || ||| Sbjct 2412 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 2353 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAA 39735 |||||||| || || | ||| ||||||||||| |||| | || ||| | ||||| ||||| Sbjct 2352 CCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTTCCAGAGAAGAA 2294 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT---GTATCATTATG 39792 ||||||||| || || || |||||||| | |||||| | || | || || | | Sbjct 2293 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 2234 Query 39793 T---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | ||||| || | |||||||||||||||||||| ||| |||||| || || || || Sbjct 2233 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 2174 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 ||| ||||||| || || || | || || || || || || || || || ||| Sbjct 2173 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 2114 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 |||||| || || ||||| ||||| || |||||||| ||||| || || | || |||| Sbjct 2113 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 2054 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 ||| || | ||||| || | | ||||| || ||| |||| || |||||| || Sbjct 2053 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1994 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 ||||| || ||||| ||| ||||| || | | ||||| | || | |||| Sbjct 1993 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 1934 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 | ||| ||| | | || || ||||| |||||||| || || ||||| ||||| Sbjct 1933 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 1874 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 ||||||||| | ||| || | || | || ||||| | ||||| | |||||||| Sbjct 1873 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 1814 >seq99766 Length=6639 Score = 255 bits (282), Expect = 8e-63 Identities = 419/600 (70%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| ||||| |||||||||||||| || || || || || || ||| Sbjct 1467 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 1408 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAA 39735 |||||||| || || | ||| ||||||||||| |||| | || ||| | ||||| ||||| Sbjct 1407 CCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTTCCAGAGAAGAA 1349 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT---GTATCATTATG 39792 ||||||||| || || || |||||||| | |||||| | || | || || | | Sbjct 1348 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1289 Query 39793 T---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | ||||| || | |||||||||||||||||||| ||| |||||| || || || || Sbjct 1288 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1229 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 ||| ||||||| || || || | || || || || || || || || || ||| Sbjct 1228 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1169 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 |||||| || || ||||| ||||| || |||||||| ||||| || || | || |||| Sbjct 1168 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1109 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 ||| || | ||||| || | | ||||| || ||| |||| || |||||| || Sbjct 1108 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1049 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 ||||| || ||||| ||| ||||| || | | ||||| | || | |||| Sbjct 1048 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 989 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 | ||| ||| | | || || ||||| |||||||| || || ||||| ||||| Sbjct 988 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 929 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 ||||||||| | ||| || | || | || ||||| | ||||| | |||||||| Sbjct 928 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 869 >seq99765 Length=6612 Score = 255 bits (282), Expect = 8e-63 Identities = 419/600 (70%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| ||||| |||||||||||||| || || || || || || ||| Sbjct 1467 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 1408 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAA 39735 |||||||| || || | ||| ||||||||||| |||| | || ||| | ||||| ||||| Sbjct 1407 CCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTTCCAGAGAAGAA 1349 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT---GTATCATTATG 39792 ||||||||| || || || |||||||| | |||||| | || | || || | | Sbjct 1348 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1289 Query 39793 T---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | ||||| || | |||||||||||||||||||| ||| |||||| || || || || Sbjct 1288 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1229 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 ||| ||||||| || || || | || || || || || || || || || ||| Sbjct 1228 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1169 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 |||||| || || ||||| ||||| || |||||||| ||||| || || | || |||| Sbjct 1168 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1109 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 ||| || | ||||| || | | ||||| || ||| |||| || |||||| || Sbjct 1108 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1049 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 ||||| || ||||| ||| ||||| || | | ||||| | || | |||| Sbjct 1048 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 989 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 | ||| ||| | | || || ||||| |||||||| || || ||||| ||||| Sbjct 988 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 929 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 ||||||||| | ||| || | || | || ||||| | ||||| | |||||||| Sbjct 928 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 869 >seq105396 Length=45554 Score = 178 bits (196), Expect = 2e-39 Identities = 474/717 (66%), Gaps = 8/717 (1%) Strand=Plus/Plus Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 ||||| |||| || ||| || |||||| ||||||| || | | || || Sbjct 3232 TCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAGACCTGGTGCC 3291 Query 69556 TCATTTGGACACATCAATGACCACACATCATCAT-CCTTAACTCGTTTCATAAATAGATC 69614 ||||| ||||| | || |||||| | || || | ||| |||| | ||| || ||||| Sbjct 3292 TCATTGGGACAAAACAGTGACCAGTC-TCCTCCTGCCTCCACTCTCTCCATGAACAGATC 3350 Query 69615 GGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttt 69674 ||| | ||| ||||| ||||||||||||| || | ||||| || || || || Sbjct 3351 GGGTACCCACAGAGCATGGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 3410 Query 69675 tttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGAC 69734 ||| || || | |||||| | || || | ||||| || || ||||| || || | | Sbjct 3411 TTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGC 3470 Query 69735 TCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAG 69794 |||| | || || || ||||||| ||| | || |||| ||| || |||| ||| Sbjct 3471 TCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTGTACACTCGCAG 3530 Query 69795 CATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA--ACTTCCTCTTGCG 69852 ||| ||||| | ||| || || | || || || || || || | || || Sbjct 3531 CATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAGTTGGCA--GCA 3588 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 ||||| || | | ||||| |||||||| || | ||||| || | || || || Sbjct 3589 CGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGT 3648 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || | ||||| ||||| || |||||||| || ||| |||||||| || || || | Sbjct 3649 TTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAA 3708 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 || | ||| | || || || ||||| || | ||| |||| || |||||||| || Sbjct 3709 GAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAATAAT 3768 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTC-AATAGCTGATTCTATATCCCACTGATGAATTCC 70091 | || ||| | ||||| || || || |||| | | | || || || || | ||| Sbjct 3769 TGTTGAGAGATAAGATTATACGTCTCCAATA-CAGCTCTGATGTCAGTCTTGTGCAGTCC 3827 Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAA 70151 || || || ||||||||||| || || || | || || || | || | ||| || Sbjct 3828 TACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCACAATTGTGCCGTTCAATTTGAA 3887 Query 70152 CAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTC 70208 || || || ||||| || || || |||||||| ||| | | ||||||||||| Sbjct 3888 GAGATAAGAGCGTTCCAATGTCTTGAAGCCAAAATAATTGAAAAAGAAGTCTCTTTC 3944 >seq96527 Length=155711 Score = 102 bits (112), Expect = 1e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678 ||| || | ||| || |||||||||||||| || || ||||| || | ||||| || Sbjct 53884 GGCAAATTTACAGTGGAGGCCCTCATCTCTGGCGATAAACTCGTTGGAGAGGGTGAGGCC 53943 Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAGA 39737 |||||| | || ||||| |||| |||| | |||||| || ||| |||||||||||||| Sbjct 53944 AGGCATGATGCCTCGCTTCTTGATCCAATAAATGGCA-CAGAAGCTTCCAGAAAAGAAGA 54002 Query 39738 TGCCTTCTACTGCTGCAAATGCAACAAG 39765 |||| || || || ||||| || || || Sbjct 54003 TGCCCTCGACGGCAGCAAAGGCCACCAG 54030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685983928818960