Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq104633 138 9e-28 seq99766 138 9e-28 seq99765 138 9e-28 >seq104633 Length=6721 Score = 138 bits (152), Expect = 9e-28 Identities = 388/590 (66%), Gaps = 12/590 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| ||||||| || | || || ||| ||| | ||||||||||| || |||| Sbjct 1826 TTTGTGCTGTTTCCCATCCGTTACCAACGCATTTGGGAGATGTACAAAAAGGCTGAGGCC 1885 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC-ATTGGATTGCATT 43818 || || |||||||| ||||| || || || || || | | || |||||| | | Sbjct 1886 TCCTTCTGGACAGCCGAAGAGGTCGACCTGGCTTCCGA-TCACAACCATTGGAGCTCTCT 1944 Query 43819 AAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 | | | || | || || || | || ||||| || |||||||| || || Sbjct 1945 TACTTCTGATGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGATGG 2004 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || || | ||| || |||| | | || || | ||| |||| | || || || || Sbjct 2005 CATTGTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGCTCG 2064 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 || || || || ||||| |||||||| || || ||||| ||||||||||| || | Sbjct 2065 CTGCTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCTCTT 2124 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAAC 44058 ||| || || ||| | || || ||||||| ||| | || ||||| || || || Sbjct 2125 GATCGACACCTACGTGAAGGACCACGTCGAGAAGGATCATCTCTTCAATGCCATCGATAC 2184 Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT--AAA----TTCAAA 44112 || ||| | | || | ||||| || ||||| || |||||||| ||| | | Sbjct 2185 TGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCAC 2244 Query 44113 TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 ||| |||| || || | || || || || | ||||||||||| ||||| || || Sbjct 2245 TGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGG 2304 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 | || |||| |||||| | ||||| | || | |||||||| | | ||| Sbjct 2305 AAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCT--CTGCTTC 2362 Query 44233 A--AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | |||||||| || || | ||||| ||| | |||||||| ||||| || Sbjct 2363 AGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTG 2412 >seq99766 Length=6639 Score = 138 bits (152), Expect = 9e-28 Identities = 388/590 (66%), Gaps = 12/590 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| ||||||| || | || || ||| ||| | ||||||||||| || |||| Sbjct 881 TTTGTGCTGTTTCCCATCCGTTACCAACGCATTTGGGAGATGTACAAAAAGGCTGAGGCC 940 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC-ATTGGATTGCATT 43818 || || |||||||| ||||| || || || || || | | || |||||| | | Sbjct 941 TCCTTCTGGACAGCCGAAGAGGTCGACCTGGCTTCCGA-TCACAACCATTGGAGCTCTCT 999 Query 43819 AAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 | | | || | || || || | || ||||| || |||||||| || || Sbjct 1000 TACTTCTGATGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGATGG 1059 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || || | ||| || |||| | | || || | ||| |||| | || || || || Sbjct 1060 CATTGTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGCTCG 1119 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 || || || || ||||| |||||||| || || ||||| ||||||||||| || | Sbjct 1120 CTGCTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCTCTT 1179 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAAC 44058 ||| || || ||| | || || ||||||| ||| | || ||||| || || || Sbjct 1180 GATCGACACCTACGTGAAGGACCACGTCGAGAAGGATCATCTCTTCAATGCCATCGATAC 1239 Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT--AAA----TTCAAA 44112 || ||| | | || | ||||| || ||||| || |||||||| ||| | | Sbjct 1240 TGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCAC 1299 Query 44113 TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 ||| |||| || || | || || || || | ||||||||||| ||||| || || Sbjct 1300 TGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGG 1359 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 | || |||| |||||| | ||||| | || | |||||||| | | ||| Sbjct 1360 AAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCT--CTGCTTC 1417 Query 44233 A--AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | |||||||| || || | ||||| ||| | |||||||| ||||| || Sbjct 1418 AGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTG 1467 >seq99765 Length=6612 Score = 138 bits (152), Expect = 9e-28 Identities = 388/590 (66%), Gaps = 12/590 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| ||||||| || | || || ||| ||| | ||||||||||| || |||| Sbjct 881 TTTGTGCTGTTTCCCATCCGTTACCAACGCATTTGGGAGATGTACAAAAAGGCTGAGGCC 940 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC-ATTGGATTGCATT 43818 || || |||||||| ||||| || || || || || | | || |||||| | | Sbjct 941 TCCTTCTGGACAGCCGAAGAGGTCGACCTGGCTTCCGA-TCACAACCATTGGAGCTCTCT 999 Query 43819 AAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 | | | || | || || || | || ||||| || |||||||| || || Sbjct 1000 TACTTCTGATGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGATGG 1059 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || || | ||| || |||| | | || || | ||| |||| | || || || || Sbjct 1060 CATTGTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGCTCG 1119 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 || || || || ||||| |||||||| || || ||||| ||||||||||| || | Sbjct 1120 CTGCTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCTCTT 1179 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAAC 44058 ||| || || ||| | || || ||||||| ||| | || ||||| || || || Sbjct 1180 GATCGACACCTACGTGAAGGACCACGTCGAGAAGGATCATCTCTTCAATGCCATCGATAC 1239 Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT--AAA----TTCAAA 44112 || ||| | | || | ||||| || ||||| || |||||||| ||| | | Sbjct 1240 TGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCAC 1299 Query 44113 TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 ||| |||| || || | || || || || | ||||||||||| ||||| || || Sbjct 1300 TGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGG 1359 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 | || |||| |||||| | ||||| | || | |||||||| | | ||| Sbjct 1360 AAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCT--CTGCTTC 1417 Query 44233 A--AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | |||||||| || || | ||||| ||| | |||||||| ||||| || Sbjct 1418 AGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTG 1467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396934233922570