Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq105396 154 2e-32 >seq105396 Length=45554 Score = 154 bits (170), Expect = 2e-32 Identities = 379/568 (67%), Gaps = 9/568 (2%) Strand=Plus/Plus Query 111210 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 |||||| | ||||| || || || || ||||| || | ||| || || ||| || | Sbjct 2981 TCTCTTTGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACATACGGCCACTTCTT 3040 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 |||| ||| | |||||| || || | |||||||| | ||| || || | | Sbjct 3041 TGGGTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGT 3100 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 || ||||| ||| |||||| ||||||||||||||| || || || || |||| Sbjct 3101 GCTGGTGGTTGGATTTCGCGTTGCAGTGATCCTTGTAGAGCATATAAGGGGTACCGGTCT 3160 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCAAACATCG-GCGGCTGGTACAATGGCGT-TGGC 111447 | | || | || | || || ||||| || | | || || | ||| | || Sbjct 3161 CTATTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCT--TAACAGCACGTCTTGC 3218 Query 111448 CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGA 111507 || ||||| ||| || |||||| || | ||||| || | ||| ||| Sbjct 3219 ACGGCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTG 3278 Query 111508 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTT 111567 ||||||||||||| | ||||| || || ||||| | || ||| |||| || | || Sbjct 3279 AAGACCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTC 3338 Query 111568 CATGAAAAGGTCTGGAATCCACAG-GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGT 111626 |||||| || || || | |||||| | ||| ||||||||||| || |||||| | Sbjct 3339 CATGAACAGATCGGGTACCCACAGAGCATG-GAAGAGATCTCTGGCTCGCTGCTCTTCCT 3397 Query 111627 CACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGAT 111686 || ||||| | | ||| | ||||| | ||| ||||||||||| ||||| |||| Sbjct 3398 TGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGAT 3457 Query 111687 AGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGT 111743 ||| ||||| | |||||| | | ||| |||||| ||| ||||| |||||| | | Sbjct 3458 AGATTGCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCAT 3517 Query 111744 TAAATACGCGAAGCATTGGAATAATACC 111771 | | || || ||||||||||| | ||| Sbjct 3518 TGTACACTCGCAGCATTGGAATGAGACC 3545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627186402014400