Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq105396 205 1e-47 >seq105396 Length=45554 Score = 205 bits (226), Expect = 1e-47 Identities = 913/1427 (64%), Gaps = 27/1427 (2%) Strand=Plus/Plus Query 118154 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTC 118213 ||| || || || | | |||| || |||||||| | ||||| |||||||||||||| Sbjct 2451 AAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAGAAGTGTAAGGCTCAAAGCACTC 2510 Query 118214 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||| || | || |||| || || || || ||||| ||||| | || | |||||| Sbjct 2511 ATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCAACCAGCAAGCTGTT 2570 Query 118274 ACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGT 118333 || ||||| | ||| ||||| | ||||||| | | |||| || | | || Sbjct 2571 GCGCAGACCGTGTTCTACAATGCTTGCCTTGAGGGAGGCCCAATCCCAACGGGAGGATGG 2630 Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 ||| | | ||||||||||||||| || || |||| | || ||| || || ||||||| Sbjct 2631 CTCAACATTCCACATATCAAACTGTAGTATGCCTTTGCTCGTTGGAGAGCCGGCAAATGT 2690 Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 118453 || || || | ||| |||| ||| | | ||| || || ||| || Sbjct 2691 GGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGATGATGTGAGAGCGGCAAAATAGAT 2750 Query 118454 TGTTTCAAAAATG-CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC 118512 ||| || |||||| || | || | || ||||| ||| || | | | || Sbjct 2751 TGTCTCGAAAATGTCGCG-GTTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGGCATGCGCA 2809 Query 118513 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 118572 | | || || || || || ||||| || || || |||||||| || | || | | | Sbjct 2810 AGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTGTGACGTCTGT 2869 Query 118573 TAGACTTCCGAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631 | || | | || ||| | || || || | || || || ||| | || | || Sbjct 2870 TGGAGTGCTCGGC-TTCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTGTTCAAGTTG 2928 Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGA--GTCTCTT 118689 ||||| ||||| | ||| ||||| |||| |||||| | | | |||||| Sbjct 2929 CGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCGTGATCAAA--TACCATTTTCTCTT 2986 Query 118690 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT-- 118747 | ||||| ||||| || || ||||| || |||||||| || || | | || || Sbjct 2987 TGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACATAC---GGCCACTTCTTTGG 3043 Query 118748 ATCA-GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCT 118806 | | ||| ||| | |||||| ||||| | ||| |||| | ||||||||| | || || Sbjct 3044 GTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGCT 3103 Query 118807 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 118866 || || || || | ||| || ||||||||| ||||| || || || || ||||| Sbjct 3104 GGTGGTTGGATTTCGCGTTGCAGTGATCCTTGTAGAGCATATAAGGGGTACCGGTCTCTA 3163 Query 118867 TTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGT-TGGCTCGC 118925 |||||| | | || || ||| | || ||| |||| ||| | || || Sbjct 3164 TTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCTTAACAG-CACGTCTTGCACGG 3222 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||| ||| || |||||| || | ||||| || | ||| ||| || Sbjct 3223 CCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAGA 3282 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 |||||||||| || || || || || ||||| | || || |||| || | || |||| Sbjct 3283 CCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCATG 3342 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCC 119103 || || || || | ||| || || ||||||||| | || ||| ||||| | | Sbjct 3343 AACAGATCGGGTACCCACAGAGCATGGAAGAGATCTC--TGGCTCGCTGCTCTTCCTTGC 3400 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | || || || ||||||||| || | ||| ||||||||||| || ||||| || | Sbjct 3401 CGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGA 3460 Query 119164 CCGCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 |||| || ||||| | | |||| | || | ||| || | || ||| | || Sbjct 3461 TTGCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTGT 3520 Query 119221 ATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGA 119278 | || || ||||||||||||| ||| | ||| ||| || || |||| || |||||| Sbjct 3521 ACACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAG- 3579 Query 119279 CTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 119338 || || | | | ||| | | |||||| || || || | ||| || || Sbjct 3580 -TTGGCAGCACGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAATCAA 3638 Query 119339 CGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 119398 ||||||| | || || |||| ||||| || || ||| | | | | ||| Sbjct 3639 GGCGCACTGTTTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAG 3698 Query 119399 GAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458 |||||| || | ||| || | || || ||||| ||||| || || || || || || Sbjct 3699 GAAGCACGAAGAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATG 3758 Query 119459 GATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 |||| | ||| || || | || |||||||| || || ||||| | Sbjct 3759 AGTGAATAATTGTTGAGAGATAAGATTATACGTCTCCAATACAGCTCTGATGTCAGTCTT 3818 Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 119565 ||| | || | | || ||||| ||||||| |||||| | |||| Sbjct 3819 GTGCAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCA 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617602523385840