Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq105396 159 4e-34 seq104633 111 2e-19 seq99766 111 2e-19 seq99765 111 2e-19 seq96527 107 2e-18 >seq105396 Length=45554 Score = 159 bits (176), Expect = 4e-34 Identities = 699/1082 (65%), Gaps = 33/1082 (3%) Strand=Plus/Minus Query 104534 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGG 104593 ||| | ||||||||||| || || | || | |||||| ||||| ||| |||||| ||| Sbjct 3545 GGTCTCATTCCAATGCTGCGAGTGTACAATGACACAGCACGCTACGTAGATCAAGGTGGT 3486 Query 104594 CGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAG 104650 | | |||||| | ||||| ||||||| ||||| ||||||||||| ||| | ||| Sbjct 3485 GGCAAGAGGAAGGGAGCATTCGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGAG 3426 Query 104651 TTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCC 104710 || | ||| || ||||| || | || ||| ||| | | ||||||||| Sbjct 3425 TTTTTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGCAGCGAGCCAGAGATCTCTTCCAT 3366 Query 104711 GCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTC 104770 ||||| ||| | || ||||| |||||| ||||||| |||| | || | ||||| || Sbjct 3365 GCTCTGTGGGTACCCGATCTGTTCATGGAGAGAGTGGAGGCAGGAGGAGACTGGTCACTG 3306 Query 104771 TTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCC--GTGGGTGAG--GAGTTTGAAGC 104826 |||||||| | ||||||| ||||| || | | | |||| ||| || ||||| | Sbjct 3305 TTTTGTCCCAATGAGGCACCAGGTCT-TC--AAGACAAATGGG-GAGCTGAATTTGAGGA 3250 Query 104827 CCTTTACACAAAGTACGAGGAAGAAGGTCGGGC--GACTGCGACGGTGCCAGCTGCCGAT 104884 || |||||| || ||| || || || || ||| | | | || ||| || Sbjct 3249 GCTGTACACACGCTATGAGCGCGAGGGCCGTGCAAGAC-GTG-CTGTTAAGGCTCAAGAG 3192 Query 104885 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 | ||| || || | | | |||| ||||| ||||| || || ||||| ||||| Sbjct 3191 CTTTGGTTTGCCATCTTGGAAGCCCAAATAGAGACCGGTACCCCTTATATGCTCTACAAG 3132 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 || ||| ||| || || || || | | || || | ||||||| || Sbjct 3131 GATCACTGCAACGCGAAATCCAACCACCAGCACCTCGGCACCATTCAATGTTCCAACCTT 3072 Query 105005 TGTACAGAAATCTTGGAATTTA---CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 105061 || || ||||| | | || | || |||||| | ||| || ||||| ||||| Sbjct 3071 TGCACTGAAATTGTCCAGTTCACATCACCCAAAGAAG---TGGCCGTATGTAATCTCGCT 3015 Query 105062 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTC 105121 ||||| ||||| || || |||||||| ||||| || | ||||||| | || || ||| Sbjct 3014 TCAATGGCTCTGCCTAAATATGTGGACAAAGAGAAAATGGTATTTGATCACGAGAAGCTC 2955 Query 105122 CACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 105181 || || || ||||| ||| | |||| || || || || | ||| Sbjct 2954 TTTGAGGTGGTCAAGGTGGTCACGCGCAACTTGAACAAGGTAATAGACGTCAACTACTAC 2895 Query 105182 CCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCA 105240 || |||| ||| || | || || | | ||| | || ||||| || || || || Sbjct 2894 CCAGTTGCAGA-AGCCGAGCACTCCAACAGACGTCACAGGCCTATTGGCCTTGGAGTACA 2836 Query 105241 GGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT-TGATTCCGACGAAGCGAAGG 105299 |||||| || || || ||| |||| | || || || || || ||| || || | Sbjct 2835 GGGTCTTGCTGACGTCTTCCTTCTCTTGCG-CATGCCTTGGGACAGCGAAGAGGCACGCG 2777 Query 105300 AAATCAATGCGCG-CATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA--G 105356 |||| |||| ||| || ||||| || ||| |||||||| | | || | Sbjct 2776 CCCTCAA-CCGCGACATTTTCGAGACAATCTATTTTGCCGCTCTCACATC--ATCCAACG 2720 Query 105357 AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGG 105416 || ||||| ||| | || || || || |||| || |||||| | |||| Sbjct 2719 AGCTGGCAAAGGAGCAAGGGCCCTACCCCACATTTGCCGGCTCTCCAACGAGCAAAGGCA 2660 Query 105417 TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-TCACTACGACTGGGAAGCTCTC 105475 | || || |||||||||||| | | |||| ||| || | | || |||| | ||| Sbjct 2659 TACTACAGTTTGATATGTGGAATGTTGAG-CCATCCTCCCGTTGGGATTGGGCCTCCCTC 2601 Query 105476 AAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACA 105535 |||| | |||| || | ||||| || ||||| | || | || || ||||| || Sbjct 2600 AAGGCAAGCATTGTAGAACACGGTCTGCGCAACAGCTTGCTGGTTGCACCTATGCCGACG 2541 Query 105536 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATC 105595 || || || | || || | || || ||||| |||||||| || ||||| | || ||| Sbjct 2540 GCTTCTACTTCCCAGATACTAGGCAACAATGAGTGCTTTGAGCCTTACACTTCTAATATC 2481 Query 105596 TA 105597 || Sbjct 2480 TA 2479 >seq104633 Length=6721 Score = 111 bits (122), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | || ||||| | |||||| | || || || | | | | |||||||| ||| Sbjct 2153 GAGAAGGATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGCTGAT 2212 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTC---CTTTGC-TGAGCGACTCTTCGC 94817 |||||| | || ||| |||| | | ||| || | |||| | |||| || | | || Sbjct 2213 TGGGCTCTCAAATGGATTGAAA-AGAGTGGCACTGACACTTTCCCTGAGAGATTGGTTGC 2271 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||| || || || || |||||||||||||| |||||| | || | ||||||||| Sbjct 2272 ATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAA 2331 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||| | || |||||||| || ||||||||| ||| ||| | ||| Sbjct 2332 GAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATC 2377 >seq99766 Length=6639 Score = 111 bits (122), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | || ||||| | |||||| | || || || | | | | |||||||| ||| Sbjct 1208 GAGAAGGATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGCTGAT 1267 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTC---CTTTGC-TGAGCGACTCTTCGC 94817 |||||| | || ||| |||| | | ||| || | |||| | |||| || | | || Sbjct 1268 TGGGCTCTCAAATGGATTGAAA-AGAGTGGCACTGACACTTTCCCTGAGAGATTGGTTGC 1326 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||| || || || || |||||||||||||| |||||| | || | ||||||||| Sbjct 1327 ATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAA 1386 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||| | || |||||||| || ||||||||| ||| ||| | ||| Sbjct 1387 GAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATC 1432 >seq99765 Length=6612 Score = 111 bits (122), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | || ||||| | |||||| | || || || | | | | |||||||| ||| Sbjct 1208 GAGAAGGATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGCTGAT 1267 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTC---CTTTGC-TGAGCGACTCTTCGC 94817 |||||| | || ||| |||| | | ||| || | |||| | |||| || | | || Sbjct 1268 TGGGCTCTCAAATGGATTGAAA-AGAGTGGCACTGACACTTTCCCTGAGAGATTGGTTGC 1326 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||| || || || || |||||||||||||| |||||| | || | ||||||||| Sbjct 1327 ATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAA 1386 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||| | || |||||||| || ||||||||| ||| ||| | ||| Sbjct 1387 GAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATC 1432 >seq96527 Length=155711 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| |||||||| ||||| |||||| || ||||||||| ||||||||||||| Sbjct 54012 GTCGAGGGCATCTTCTTTTCTGGAAGCTTCTGTGCCATTTATTGGATCAAGAAGCGAGGC 53953 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||||| || ||| | ||||||||||| ||||| | | || ||||| |||||| Sbjct 53952 ATCATGCCTGGCCTCACCCTCTCCAACGAGTTTATCGCCAGAGATGAGGGCCTCCAC 53896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582475483077360