Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq105396 147 2e-30 seq104633 102 9e-17 seq99766 102 9e-17 seq99765 102 9e-17 seq96527 91.5 2e-13 >seq105396 Length=45554 Score = 147 bits (162), Expect = 2e-30 Identities = 332/489 (68%), Gaps = 10/489 (2%) Strand=Plus/Plus Query 79356 CCAGTCCTCGTCCTTC-TCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 |||||| || |||| | || || |||||||||| || || || | |||||| || || Sbjct 3312 CCAGTC-TCCTCCTGCCTCCACTCTCTCCATGAACAGATCGGGTACCCACAGAGCATGGA 3370 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 |||| || | | ||| ||| || | ||| |||||| |||||| | ||| || | Sbjct 3371 AGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAA 3430 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 |||||| |||||||| |||||||||||||| ||||| | ||||| | |||||| || | Sbjct 3431 AGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCTCCCTTCCTCTTGCCACCAC 3490 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 | || | ||||| || || |||| ||| | ||||| ||||| || | || |||| || Sbjct 3491 CTTGATCTACGTAGCGTGCTGTGTCATTGTACACTCGCAGCATTGGAATGAGACCGTTGG 3550 Query 79595 CGACGCCGTTCGTCCCGTTGA--TTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGA 79651 |||||| || || ||| | || || | || ||||| || | ||| | Sbjct 3551 ACGTGCCGTTGGTGCCCCTGATGTACGAGT--TGGCAGCACGAAT-TTTGTGCACACTAA 3607 Query 79652 TTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGC 79711 || || || |||| | ||| || || ||||||| || ||||| ||||| || | Sbjct 3608 GACCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATATCC 3667 Query 79712 CCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT-TC 79770 | || || ||| || | ||| || |||||||| || | ||| ||| || | Sbjct 3668 CTTCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAGTTGT-GGTCGTGGC 3726 Query 79771 GTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCG 79830 || || || ||||| || || || || || || ||||| || | ||| || |||| Sbjct 3727 GTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAATAATTGTTGAGAGATAAGATTA 3786 Query 79831 TACGTCTCC 79839 ||||||||| Sbjct 3787 TACGTCTCC 3795 Score = 107 bits (118), Expect = 2e-18 Identities = 294/440 (67%), Gaps = 13/440 (3%) Strand=Plus/Plus Query 78186 GCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCAT 78245 ||| || || | ||||||||||| ||||| || |||||||||||| |||| | |||||| Sbjct 2127 GCGGGTGCGTAGGTAGTACATGCCAGTCTTTAGGCCCTTCTTCCATGCGTAAAAGTGCAT 2186 Query 78246 ACTCGACAGCTTGGCCAGACTCGGGTTCT-CCATGAAGATGTTGAGCGACTGGGACTGGT 78304 || || |||| | | ||| ||| |||| | | ||| || |||| |||| Sbjct 2187 CGACGTGAGTCTGGCGA-ATGAGGGCTCTGCCATATATACGTTTAGGCTCTGGCTTTGGT 2245 Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACT--TTTGCGGAATCTCCCA 78362 |||||||||| | ||||| || |||||||| | || || | || ||||||||||| Sbjct 2246 CGATGTACGCTGCTCGGTCAGCTGCCATGTCTAAGA--GAATACGCTGAGGAATCTCCCA 2303 Query 78363 GATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGAT---GTCCAGCGCTTGTACGCTCCC 78419 | || ||| | | ||| ||||| |||| ||| | ||||| ||| || Sbjct 2304 AACTGTTTTGTACAAGCGCTTGAGCTCGCTTGGGATCTCGTCTATGGCTTGCACGGATCC 2363 Query 78420 ACCG-GCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGAT 78478 | | || | |||| | ||||| ||| | | ||||| || | | |||| Sbjct 2364 ATTGTGCGC-AACAAGCTTGTTCTTCATTGCATGATTCCACAGACCCAGTGCCATCAGAT 2422 Query 78479 CCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGA 78538 ||| || || ||| ||| |||| || || || |||| | | || | ||||| Sbjct 2423 CCCTGAGCAAGTGTTCGTTGATCACCGTAAAGTCTCCAGCCAAGATGCGCCTTGTGTAGA 2482 Query 78539 TGTTGGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCG 78597 | || | ||||| ||||| ||||| ||| ||||| || | ||||||| || || || Sbjct 2483 TATTAGAAGTGTAAGGCTC-AAAGCACTCATTGTTGCCTAGTATCTGGGAAGTAGAAGCC 2541 Query 78598 GTCGGCATGGGTGCGACCAG 78617 |||||||| ||||| ||||| Sbjct 2542 GTCGGCATAGGTGCAACCAG 2561 Score = 102 bits (112), Expect = 9e-17 Identities = 293/446 (66%), Gaps = 10/446 (2%) Strand=Plus/Minus Query 19193 TTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA-ACAACCCGCAGATGTC 19251 || ||||| || || || || || |||||||| || || ||| || ||| || | || Sbjct 3767 TTATTCACTCATGCCACTCCCACACTTTTCAATGCTGGCACGCCACGACCA-CAACTTTC 3709 Query 19252 GAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAA 19311 || ||||| || ||| | || |||||||| || || || ||||| ||||| || Sbjct 3708 TTCGTGCTTCCTCGTTAACATGCAAGAAGACAGCATAGAAGGGATATACGACACGCTTAA 3649 Query 19312 GGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATC- 19369 ||||||| || || ||| | |||| || || || | ||| | || || Sbjct 3648 ACAGTGCGCCTTGATTTCTAAGAGCGCCGGAGGAATTGGTCTTAGTGTGCACAAAATTCG 3589 Query 19370 --CGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAA 19427 | | | | | ||||| ||| || || ||||| || ||||| || | |||| Sbjct 3588 TGCTGCCAACTCGTACA----TCAGGGGCACCAACGGCACGTCCAACGGTCTCATTCCAA 3533 Query 19428 TGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGG 19487 |||| || || | ||| |||| || | ||||| | || || || ||||| | |||| Sbjct 3532 TGCTGCGAGTGTACAATGACACAGCACGCTACGTAGATCAAGGTGGTGGCAAGAGGAAGG 3473 Query 19488 GCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGC 19547 | | ||||| ||||| || ||||| |||||||||||| || | || || | || ||| Sbjct 3472 GAGCATTCGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGAGTTTTTGGAGCTGA 3413 Query 19548 GCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTC 19607 |||||| || | || ||| ||| | || |||||| || ||||| | | Sbjct 3412 AAAAGAACCACGGCAAGGAAGAGCAGCGAGCCAGAGATCTCTTCCATGCTCTGTGGGTAC 3353 Query 19608 CGGACCTATTCATGGAGAAGGTTGAG 19633 | || || |||||||||| || ||| Sbjct 3352 CCGATCTGTTCATGGAGAGAGTGGAG 3327 >seq104633 Length=6721 Score = 102 bits (112), Expect = 9e-17 Identities = 343/531 (65%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| | | ||| ||| | ||||| || || | || ||||| ||||| Sbjct 1886 TCCTTCTGGACAGCCGAAGAGGTCGACCTGGCTTCCGATCACAACCATTGG----AGCTC 1941 Query 59673 AATTAC----GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGA 59728 |||| || ||| ||| ||||| ||| || |||||||||| || || ||| Sbjct 1942 TCTTACTTCTGATGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGA 2001 Query 59729 TGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGC 59788 ||| ||||||| || || | | | ||| | || | |||||| | ||||| Sbjct 2002 TGGCATTGTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGC 2061 Query 59789 CCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCT 59848 || | ||||||| | |||| || ||| || ||||| || | ||| || || Sbjct 2062 TCGCTGCTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCT 2121 Query 59849 CATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA 59908 | ||||||| | | || ||||| | | ||||||| | ||| ||| |||||| || Sbjct 2122 CTTGATCGACACCTACGTGAAGGACCACGTCGAGAAGGATCATCTCTTCAATGCCATCGA 2181 Query 59909 GACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAG 59967 || || | || || | ||||| || ||||| | | ||||| || ||| Sbjct 2182 TACTGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAA---GAG 2238 Query 59968 CATCATTTGCACAACGTCTCATAGCTT--TTGCATGCG------TGGAAGGAATCTTCTT 60019 || | ||| || | || || |||||| || ||||||| |||||||| Sbjct 2239 TGGCACTGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTT 2298 Query 60020 CTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAG 60079 |||||| |||||| | || || |||||||| ||| | ||||||||||| ||||| | Sbjct 2299 CTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTG 2358 Query 60080 TTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||| ||| ||| |||| | | || |||||||| ||| || ||||| Sbjct 2359 CTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGC 2409 >seq99766 Length=6639 Score = 102 bits (112), Expect = 9e-17 Identities = 343/531 (65%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| | | ||| ||| | ||||| || || | || ||||| ||||| Sbjct 941 TCCTTCTGGACAGCCGAAGAGGTCGACCTGGCTTCCGATCACAACCATTGG----AGCTC 996 Query 59673 AATTAC----GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGA 59728 |||| || ||| ||| ||||| ||| || |||||||||| || || ||| Sbjct 997 TCTTACTTCTGATGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGA 1056 Query 59729 TGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGC 59788 ||| ||||||| || || | | | ||| | || | |||||| | ||||| Sbjct 1057 TGGCATTGTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGC 1116 Query 59789 CCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCT 59848 || | ||||||| | |||| || ||| || ||||| || | ||| || || Sbjct 1117 TCGCTGCTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCT 1176 Query 59849 CATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA 59908 | ||||||| | | || ||||| | | ||||||| | ||| ||| |||||| || Sbjct 1177 CTTGATCGACACCTACGTGAAGGACCACGTCGAGAAGGATCATCTCTTCAATGCCATCGA 1236 Query 59909 GACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAG 59967 || || | || || | ||||| || ||||| | | ||||| || ||| Sbjct 1237 TACTGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAA---GAG 1293 Query 59968 CATCATTTGCACAACGTCTCATAGCTT--TTGCATGCG------TGGAAGGAATCTTCTT 60019 || | ||| || | || || |||||| || ||||||| |||||||| Sbjct 1294 TGGCACTGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTT 1353 Query 60020 CTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAG 60079 |||||| |||||| | || || |||||||| ||| | ||||||||||| ||||| | Sbjct 1354 CTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTG 1413 Query 60080 TTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||| ||| ||| |||| | | || |||||||| ||| || ||||| Sbjct 1414 CTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGC 1464 >seq99765 Length=6612 Score = 102 bits (112), Expect = 9e-17 Identities = 343/531 (65%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| | | ||| ||| | ||||| || || | || ||||| ||||| Sbjct 941 TCCTTCTGGACAGCCGAAGAGGTCGACCTGGCTTCCGATCACAACCATTGG----AGCTC 996 Query 59673 AATTAC----GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGA 59728 |||| || ||| ||| ||||| ||| || |||||||||| || || ||| Sbjct 997 TCTTACTTCTGATGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGA 1056 Query 59729 TGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGC 59788 ||| ||||||| || || | | | ||| | || | |||||| | ||||| Sbjct 1057 TGGCATTGTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGC 1116 Query 59789 CCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCT 59848 || | ||||||| | |||| || ||| || ||||| || | ||| || || Sbjct 1117 TCGCTGCTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCT 1176 Query 59849 CATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA 59908 | ||||||| | | || ||||| | | ||||||| | ||| ||| |||||| || Sbjct 1177 CTTGATCGACACCTACGTGAAGGACCACGTCGAGAAGGATCATCTCTTCAATGCCATCGA 1236 Query 59909 GACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAG 59967 || || | || || | ||||| || ||||| | | ||||| || ||| Sbjct 1237 TACTGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAA---GAG 1293 Query 59968 CATCATTTGCACAACGTCTCATAGCTT--TTGCATGCG------TGGAAGGAATCTTCTT 60019 || | ||| || | || || |||||| || ||||||| |||||||| Sbjct 1294 TGGCACTGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTT 1353 Query 60020 CTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAG 60079 |||||| |||||| | || || |||||||| ||| | ||||||||||| ||||| | Sbjct 1354 CTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTG 1413 Query 60080 TTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||| ||| ||| |||| | | || |||||||| ||| || ||||| Sbjct 1414 CTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGC 1464 >seq96527 Length=155711 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| ||| || || |||||||| ||||| |||||||| |||| ||| || Sbjct 54024 GCCTTTGCTGCCGTCGAGGGCATCTTCTTTTCTGGAAGCTTCTGTGCCATTTATTGGATC 53965 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| ||| ||||||| ||||| | ||||||||||| | || || | || ||| Sbjct 53964 AAGAAGCGAGGCATCATGCCTGGCCTCACCCTCTCCAACGAGTTTATCGCCAGAGATGAG 53905 Query 60111 GGCCTCCA 60118 |||||||| Sbjct 53904 GGCCTCCA 53897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547786252496160