Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq104633 132 5e-26 seq99766 132 5e-26 seq99765 132 5e-26 seq105396 105 7e-18 seq96527 87.8 2e-12 >seq104633 Length=6721 Score = 132 bits (146), Expect = 5e-26 Identities = 361/549 (66%), Gaps = 14/549 (3%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| ||| ||||||||||| ||||| ||||| || | ||||| Sbjct 2410 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 2351 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 |||||| || || | |||||| | ||||||||||| ||||||| ||| ||||||||| Sbjct 2350 AGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGAT 2291 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----- 74924 |||||| || || || || || | | | | ||| | || | | || Sbjct 2290 GCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTTTTC 2231 Query 74925 -ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTG 74983 ||||| | ||||||| |||||||| ||||| | ||| ||||||||||| || | Sbjct 2230 AATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGCATT 2171 Query 74984 GAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 |||||| ||||||| || | ||||| ||| |||| |||| || || ||| | Sbjct 2170 GAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATACAT 2111 Query 75044 CTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 ||||| ||||| ||| || ||| | ||||||| | || ||||| | ||| Sbjct 2110 TTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGAAT 2051 Query 75104 CTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 ||| | || | |||| || | | ||||| | || ||||| || ||||| Sbjct 2050 CTGAATCTCTGTCATGAAGCGCCCA--GCCAAGTTCTCAGTCACAATGCCATCAGAGGCA 1993 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 || || || |||| || || || ||||| | |||||| ||| || | |||| Sbjct 1992 GCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCAA 1933 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATCGCCT 75279 | || | || |||| || | ||| ||| | |||||||| | || | |||| Sbjct 1932 TGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCA--GCCT 1875 Query 75280 TTTTGTACA 75288 ||||||||| Sbjct 1874 TTTTGTACA 1866 >seq99766 Length=6639 Score = 132 bits (146), Expect = 5e-26 Identities = 361/549 (66%), Gaps = 14/549 (3%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| ||| ||||||||||| ||||| ||||| || | ||||| Sbjct 1465 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 1406 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 |||||| || || | |||||| | ||||||||||| ||||||| ||| ||||||||| Sbjct 1405 AGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGAT 1346 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----- 74924 |||||| || || || || || | | | | ||| | || | | || Sbjct 1345 GCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTTTTC 1286 Query 74925 -ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTG 74983 ||||| | ||||||| |||||||| ||||| | ||| ||||||||||| || | Sbjct 1285 AATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGCATT 1226 Query 74984 GAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 |||||| ||||||| || | ||||| ||| |||| |||| || || ||| | Sbjct 1225 GAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATACAT 1166 Query 75044 CTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 ||||| ||||| ||| || ||| | ||||||| | || ||||| | ||| Sbjct 1165 TTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGAAT 1106 Query 75104 CTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 ||| | || | |||| || | | ||||| | || ||||| || ||||| Sbjct 1105 CTGAATCTCTGTCATGAAGCGCCCA--GCCAAGTTCTCAGTCACAATGCCATCAGAGGCA 1048 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 || || || |||| || || || ||||| | |||||| ||| || | |||| Sbjct 1047 GCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCAA 988 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATCGCCT 75279 | || | || |||| || | ||| ||| | |||||||| | || | |||| Sbjct 987 TGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCA--GCCT 930 Query 75280 TTTTGTACA 75288 ||||||||| Sbjct 929 TTTTGTACA 921 >seq99765 Length=6612 Score = 132 bits (146), Expect = 5e-26 Identities = 361/549 (66%), Gaps = 14/549 (3%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| ||| ||||||||||| ||||| ||||| || | ||||| Sbjct 1465 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 1406 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 |||||| || || | |||||| | ||||||||||| ||||||| ||| ||||||||| Sbjct 1405 AGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGAT 1346 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----- 74924 |||||| || || || || || | | | | ||| | || | | || Sbjct 1345 GCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTTTTC 1286 Query 74925 -ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTG 74983 ||||| | ||||||| |||||||| ||||| | ||| ||||||||||| || | Sbjct 1285 AATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGCATT 1226 Query 74984 GAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 |||||| ||||||| || | ||||| ||| |||| |||| || || ||| | Sbjct 1225 GAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATACAT 1166 Query 75044 CTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 ||||| ||||| ||| || ||| | ||||||| | || ||||| | ||| Sbjct 1165 TTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGAAT 1106 Query 75104 CTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 ||| | || | |||| || | | ||||| | || ||||| || ||||| Sbjct 1105 CTGAATCTCTGTCATGAAGCGCCCA--GCCAAGTTCTCAGTCACAATGCCATCAGAGGCA 1048 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 || || || |||| || || || ||||| | |||||| ||| || | |||| Sbjct 1047 GCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCAA 988 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATCGCCT 75279 | || | || |||| || | ||| ||| | |||||||| | || | |||| Sbjct 987 TGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCA--GCCT 930 Query 75280 TTTTGTACA 75288 ||||||||| Sbjct 929 TTTTGTACA 921 >seq105396 Length=45554 Score = 105 bits (116), Expect = 7e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 55745 ACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTAC 55804 || || ||||||||||| ||| | ||| | |||||| ||||| || | |||||| Sbjct 2309 ACAGTTTGGGAGATTCCTCAGCGTATTCTCTTAGACATGGCAGCTGACCGAGCAGCGTAC 2250 Query 55805 ATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGC 55864 |||||||| |||| || ||| | | |||| | || ||| | |||| | | Sbjct 2249 ATCGACCAAAGCCAGAGCCTAAACGTATATATGGCAGAGCCCTCATTCGCCAGACTCACG 2190 Query 55865 TCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||||||||||||| ||||||||||| || ||||| || |||||||| || || ||| Sbjct 2189 TCGATGCACTTTTACGCATGGAAGAAGGGCCTAAAGACTGGCATGTACTACCTACGCACC 2130 Query 55925 CGC 55927 ||| Sbjct 2129 CGC 2127 >seq96527 Length=155711 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| ||||||||| || || || || || | | ||||||||||| | || ||||| Sbjct 53902 GCCCTCATCTCTGGCGATAAACTCGTTGGAGAGGGTGAGGCCAGGCATGATGCCTCGCTT 53961 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | |||| | |||||||||||| ||| ||||||||||| ||||| ||||| Sbjct 53962 CTTGATCCAATAAATGGCACAGAAGCTTCCAGAAAAGAAGATGCCCTCGACGGCAGCAAA 54021 Query 74888 GGCGACAAGGCGTTGC 74903 ||| || ||||| ||| Sbjct 54022 GGCCACCAGGCGATGC 54037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546479214697200