Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq99507 93.3 3e-14 seq99508 86.0 4e-12 >seq99507 Length=2862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| || || ||||| || ||||||| |||| |||||| | | Sbjct 2329 ATGCAGATTTTCGTGAAGACGCTCACTGGAAAGACTATTACACTTGAGGTCGAATCCTCT 2388 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | || || || || || ||||| ||||| |||| || ||| Sbjct 2389 GACTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 2448 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || ||||| || || || | || |||| || | ||| |||| |||||| Sbjct 2449 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCTTAGCCGACTACAAC 2508 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGAC 28020 |||||||||||| || | || ||||| | ||| || | |||||| || Sbjct 2509 ATCCAAAAAGAGTCGACCCTTCACTTGGTGCTTCGTCTGAGGGGCGGCAAC 2559 >seq99508 Length=2583 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| || || ||||| || ||||||| |||| |||||| | | Sbjct 2329 ATGCAGATTTTCGTGAAGACGCTCACTGGAAAGACTATTACACTTGAGGTCGAATCCTCT 2388 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | || || || || || ||||| ||||| | || || ||| Sbjct 2389 GACTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCTGATCAG 2448 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || ||||| || || || | || || | |||| |||| ||||||||||| Sbjct 2449 CAACGTTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAAC 2508 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 || ||||| ||| ||| | || | ||| |||| Sbjct 2509 ATTCAAAAGGAGTCCACCCTTCACCTCGTTCTGCG 2543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355395236518878