Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq104633 268 1e-66 seq99766 268 1e-66 seq99765 268 1e-66 seq105396 197 2e-45 seq96527 84.2 3e-11 >seq104633 Length=6721 Score = 268 bits (296), Expect = 1e-66 Identities = 420/600 (70%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| || ||||||||||| |||||||| || || || || || || ||| Sbjct 2413 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 2354 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 |||||||| || || | ||| ||||||||||| || | ||| |||||| ||||| Sbjct 2353 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 2294 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCA---TCA---TT 46802 |||||||| || || |||||||| || | |||||| | || || || || || Sbjct 2293 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 2234 Query 46803 ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 | |||||| | ||||||||||||| || ||||| ||| |||||| || || || || Sbjct 2233 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 2174 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 ||| |||||| | || || | || || || || || || || || || ||| Sbjct 2173 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 2114 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 |||||| || |||||||| ||||| || |||||||| ||||| || || | || |||| Sbjct 2113 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 2054 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042 |||||| | |||||| || || ||| ||| |||||| |||| || |||||| || Sbjct 2053 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1994 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102 |||||| || ||||| ||| ||||| || | | ||||| | ||| || |||| Sbjct 1993 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 1934 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 | ||| ||| | | || || ||||| ||||||||||| || ||||| || || Sbjct 1933 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 1874 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||| ||||| | ||| || | || |||| ||||| | ||||| | |||||||| Sbjct 1873 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 1814 >seq99766 Length=6639 Score = 268 bits (296), Expect = 1e-66 Identities = 420/600 (70%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| || ||||||||||| |||||||| || || || || || || ||| Sbjct 1468 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1409 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 |||||||| || || | ||| ||||||||||| || | ||| |||||| ||||| Sbjct 1408 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1349 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCA---TCA---TT 46802 |||||||| || || |||||||| || | |||||| | || || || || || Sbjct 1348 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1289 Query 46803 ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 | |||||| | ||||||||||||| || ||||| ||| |||||| || || || || Sbjct 1288 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1229 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 ||| |||||| | || || | || || || || || || || || || ||| Sbjct 1228 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1169 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 |||||| || |||||||| ||||| || |||||||| ||||| || || | || |||| Sbjct 1168 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1109 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042 |||||| | |||||| || || ||| ||| |||||| |||| || |||||| || Sbjct 1108 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1049 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102 |||||| || ||||| ||| ||||| || | | ||||| | ||| || |||| Sbjct 1048 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 989 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 | ||| ||| | | || || ||||| ||||||||||| || ||||| || || Sbjct 988 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 929 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||| ||||| | ||| || | || |||| ||||| | ||||| | |||||||| Sbjct 928 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 869 >seq99765 Length=6612 Score = 268 bits (296), Expect = 1e-66 Identities = 420/600 (70%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| || ||||||||||| |||||||| || || || || || || ||| Sbjct 1468 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1409 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 |||||||| || || | ||| ||||||||||| || | ||| |||||| ||||| Sbjct 1408 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1349 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCA---TCA---TT 46802 |||||||| || || |||||||| || | |||||| | || || || || || Sbjct 1348 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1289 Query 46803 ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 | |||||| | ||||||||||||| || ||||| ||| |||||| || || || || Sbjct 1288 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1229 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 ||| |||||| | || || | || || || || || || || || || ||| Sbjct 1228 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1169 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 |||||| || |||||||| ||||| || |||||||| ||||| || || | || |||| Sbjct 1168 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1109 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042 |||||| | |||||| || || ||| ||| |||||| |||| || |||||| || Sbjct 1108 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1049 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102 |||||| || ||||| ||| ||||| || | | ||||| | ||| || |||| Sbjct 1048 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 989 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 | ||| ||| | | || || ||||| ||||||||||| || ||||| || || Sbjct 988 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 929 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||| ||||| | ||| || | || |||| ||||| | ||||| | |||||||| Sbjct 928 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 869 >seq105396 Length=45554 Score = 197 bits (218), Expect = 2e-45 Identities = 955/1504 (63%), Gaps = 26/1504 (2%) Strand=Plus/Plus Query 75724 AAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 75783 ||| ||||||| ||| | | | ||||| |||||| || || || || | | || Sbjct 2451 AAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAGAAGTGTAAGGCTCAAAGCACTC 2510 Query 75784 ATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATT 75843 |||||| || | || || | ||| ||||| |||||||||||||| |||| || || || Sbjct 2511 ATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCAACCAGCAAGCTGTT 2570 Query 75844 TCTGAGACCATGTGTTCTG--ATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 | ||||| ||||||| || | | || || | |||||||||| | ||| Sbjct 2571 GCGCAGACC--GTGTTCTACAATGCTTGCCTTGAGGGAGGCCCAATCCCAACGGGAGGAT 2628 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATAT 75961 || |||||| ||| | ||| | ||||| || || ||||| | || || | || Sbjct 2629 GGCTCAACATTCCACATATCAAACTGTAGTATGCCTTTGCTCGTTGGAGAGCCGGCAAAT 2688 Query 75962 GTTTCGTAAGTCCCGTCCT--TTT--CAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 || ||| | ||| | || ||| ||||| ||| | | | || | | Sbjct 2689 GTGGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGATGATGTG----AGAGCGGCAAA 2744 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||| ||||| |||||||| | || || | | || || || || |||| Sbjct 2745 ATAGATTGTCTCGAAAATGTCGCGGTTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGGCAT 2804 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137 | || |||| || | || || || ||||| ||||||| |||||||| || || | Sbjct 2805 GCGCAAGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTGTGACG 2864 Query 76138 CTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAG 76197 | ||||| || ||||||| || ||||| || || | ||||| | || || | Sbjct 2865 TCTGTTGGAGTGCTCGGCTTCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTGTTCAA 2924 Query 76198 ATTTCTGACAACTACTTTAACCACGTCCTTTAGTTT-----GAGAAAATCAAATTTTCCA 76252 || | || || || ||||| || || || || |||| |||||| Sbjct 2925 GTTGCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCGTGATCAAATACCATTTTCTC 2984 Query 76253 TCTATC-ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGC 76311 | | || ||| | || ||||| || || || |||||||| ||||| || || || | Sbjct 2985 TTTGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACATACGGCCACTTCTTTGGG 3044 Query 76312 ATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTG 76371 | | || | || || ||||| || || ||| | || || || || | || Sbjct 3045 TGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTG 3104 Query 76372 TTGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 |||||| || ||| || ||| ||||| || || | | | || || || || || | Sbjct 3105 GTGGTTGGATTTCGCGTTGCAGTGA-TCCTTGTAGAGCATATAAGGGGTACCGGTCTCTA 3163 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGAT-TTGTATCGC 76489 | || | ||| | || | ||| | || ||| || | | | ||| | || Sbjct 3164 TTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCTTAACAGCACGTCTTGCACGGC 3223 Query 76490 TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 ||| | ||||| |||| || | | ||||||||| ||||||| || | | | Sbjct 3224 C-CTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAGA 3282 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || || ||||| ||||| | || |||||| || || || ||| || | | ||| Sbjct 3283 CCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCATG 3342 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || ||||| |||| ||| |||||| || ||||||| || || | ||||| || || Sbjct 3343 AACAGATCGGGTACCCACAGAGCATGGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCG 3402 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 |||||||| || || | ||||| | || || | ||||| || || ||||| || Sbjct 3403 TGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATT 3462 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | ||| | || ||| || ||||||| || | || |||| ||| || Sbjct 3463 GCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTGTAC 3522 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA--ACTTC 76847 |||| || ||||||||| | ||||| || || || || || || || || | || Sbjct 3523 ACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAGTTG 3582 Query 76848 CACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAG 76907 || |||||||| || | | || || |||||||| || | ||||| || | | Sbjct 3583 G-CA-GCACGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAATCAAGG 3640 Query 76908 CACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAA 76967 | || |||| | ||||| || || || ||||| || || || |||||||| || | Sbjct 3641 CGCACTGTTTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGGA 3700 Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027 | || ||| | ||| | | || || ||||| || | ||| |||| ||||||| Sbjct 3701 AGCACGAAGAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAG 3760 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087 |||| ||| || ||| | ||||| || || || | || ||| || || | | Sbjct 3761 TGAATAATTGTTGAGAGATAAGATTATACGTCTCCAATACAGCTCTGATGTCAGTCTTGT 3820 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 | | ||||||||| || ||||||||||| || || || | || ||| | | || | Sbjct 3821 GCAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCACAATTGTGCCGTTCA 3880 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207 ||| || | || || |||||| || || || |||||||| ||| | | ||||||| Sbjct 3881 ATTTGAAGAGATAAGAGCGTTCCAATGTCTTGAAGCCAAAATAATTGAAAAAGAAGTCTC 3940 Query 77208 TTTC 77211 |||| Sbjct 3941 TTTC 3944 >seq96527 Length=155711 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 ||||| | ||| || ||||| |||||||| || || ||||| || | ||||| ||| Sbjct 53885 GCAAATTTACAGTGGAGGCCCTCATCTCTGGCGATAAACTCGTTGGAGAGGGTGAGGCCA 53944 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATG 46752 ||||| | || ||||| |||| |||| | || || ||| |||||||||||| ||| Sbjct 53945 GGCATGATGCCTCGCTTCTTGATCCAATAAATGGCACAGAAGCTTCCAGAAAAGAAGATG 54004 Query 46753 CCTTCTACAGCCGCGAATGCGACAAG 46778 || || || || || || || || || Sbjct 54005 CCCTCGACGGCAGCAAAGGCCACCAG 54030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711974487300480