Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq25559 114 1e-20 >seq25559 Length=72922 Score = 114 bits (126), Expect = 1e-20 Identities = 301/458 (66%), Gaps = 15/458 (3%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || ||||| || | |||||||| | |||||| | ||||||| || | | Sbjct 47735 AGGCACGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATTTCGTTACTGAAGGCC 47676 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 47675 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCCGAGAAG 47616 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || ||| ||| | || ||||| | ||| || || Sbjct 47615 AAGATGCCCTCGACGGCAGCGAACCCGACGAGACGCTCGGCAAAGGTCTCGACGCCCTCC 47556 Query 17135 TTGTTACGAATCCATTTCTGCA---CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 ||||| ||||| | ||| |||| ||||| || ||| | | || || Sbjct 47555 TTGTTG---ATCCA---CCGCATGGCCCAGTCGGCCTTCCTCTTGACCGAGGGCACGGTG 47502 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 || ||||| || | | || || || |||| | | ||||| |||||||| Sbjct 47501 TCGATGGCGCGGAAGAGGTGGTCCTTCTCGACGGGGTCCTTGACGTACGTGTCGATGAGG 47442 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 || |||||| || ||||| |||||||| || || ||||| || ||||| ||||| || Sbjct 47441 AGCGAGTACATCTCCGAGTGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAAGCAGCGC 47382 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || |||| | || || ||| ||| || | || || || || ||||||||| Sbjct 47381 GCCTCCGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCCGCGACGATGCCG 47322 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||| |||||||| || || | | ||||| ||||| Sbjct 47321 TCGCTGGCGGCGAAGAAGGCGAGCACGTGCTTGATGAA 47284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517376181447840