Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq25886 107 2e-18 >seq25886 Length=15935 Score = 107 bits (118), Expect = 2e-18 Identities = 107/137 (78%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| ||||||||||| || ||||| || | ||||| | ||||| || | || Sbjct 5718 GACGTTGCCGAGATCGCCGACATGGCGCTCCTCGTCATCGGGTCCACCGTGCTTCT--TG 5661 Query 21198 CGTA--GGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCG 21255 | | ||||| |||||| |||| ||| | |||||||||| || ||||||| |||||| Sbjct 5660 CCAAAGGGGTTGAAGTGCCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCAAACTCG 5601 Query 21256 TGAACGTGAAAGCCGTG 21272 || ||||| |||||||| Sbjct 5600 TGGACGTGGAAGCCGTG 5584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414440482354072