Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq23693 132 1e-25 seq24868 113 1e-19 seq20369 100 7e-16 seq17696 100 7e-16 seq21899 95.1 3e-14 >seq23693 Length=4026 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||||| || || | ||||| Sbjct 3356 AAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTC 3415 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||||||||| || ||||| || || Sbjct 3416 CTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCTTCCTTGTC 3475 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| |||||| || || || || | ||||||||| | || ||||| || ||||| || Sbjct 3476 CTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGGGTAATGGT 3535 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || || |||||||| Sbjct 3536 CTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 3568 Score = 100 bits (110), Expect = 7e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 2900 AAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTC 2959 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| || |||||||| || || || || || Sbjct 2960 CTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTC 3019 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 |||||||||| || || || || | || || | || | || ||||| || || |||| Sbjct 3020 CTGAATCTTTTGCTTCACGTTCTCAATCGTGTC-CGAGCTCTCGACCTCGAGGGTGATAG 3078 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 3079 TCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 3112 >seq24868 Length=8702 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 7028 AAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTC 6969 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||| ||||| || || || || || Sbjct 6968 CTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTC 6909 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || ||||| || | ||| ||| | || ||||| || || || || Sbjct 6908 CTGAATCTTTTGCTTGACATTCTCGATGGTGTCGGACGACTCAACCTCGAGGGTGATGGT 6849 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566 ||| ||||| || || || || || ||||||||| | ||| Sbjct 6848 CTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTGTCTGT 6809 >seq20369 Length=2600 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || ||||||| || || | ||||| || || || || || || || || Sbjct 1782 TTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 1841 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| ||||| || || || || || || |||||||||||| || ||||| || Sbjct 1842 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTTGACATTCTCG 1901 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | ||| ||| | || ||||| || || || |||||||| || || || || || || Sbjct 1902 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTCACGAAG 1961 Query 104552 ATCTGCAT 104559 |||||||| Sbjct 1962 ATCTGCAT 1969 >seq17696 Length=2611 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || ||||||| || || | ||||| || || || || || || || || Sbjct 819 TTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 760 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| ||||| || || || || || || |||||||||||| || ||||| || Sbjct 759 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTTGACATTCTCG 700 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | ||| ||| | || ||||| || || || |||||||| || || || || || || Sbjct 699 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTCACGAAG 640 Query 104552 ATCTGCAT 104559 |||||||| Sbjct 639 ATCTGCAT 632 >seq21899 Length=10926 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | || || || || || || || Sbjct 1986 GTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCATCCTCCAGCTGCTTGCCG 1927 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || || |||||||||||| || Sbjct 1926 GCGAAGATCAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTTG 1867 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| || || || |||||||| || || || Sbjct 1866 ACATTCTCGATGGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTACCCGTGAGGGTC 1807 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1806 TTGACGAAGATCTGCAT 1790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151012066977104