Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq15340 95.1 1e-14 seq23693 84.2 2e-11 seq20369 84.2 2e-11 seq17696 84.2 2e-11 seq24868 82.4 7e-11 seq17601 82.4 7e-11 >seq15340 Length=11482 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || ||||| || ||||| ||| Sbjct 520 TCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTG 579 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||| ||| ||| ||||||| ||||| |||| |||||| Sbjct 580 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCAGACGACTCGACCTCAAGAGTGATG 639 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || |||||||| || || || |||||||||||||||| Sbjct 640 GTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCATGC 676 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || ||| | ||||| ||||| || ||| Sbjct 250 GTSGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 309 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || ||||| || || || ||||| | || || ||| Sbjct 310 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 369 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | ||||| || | ||||||||| || ||||| || || Sbjct 370 ACGTTCTCGATCGTGTCGGACGACTCGACTTCGAGCGTGATGGTCTTGCCAGTCAGGGTC 429 Query 94991 TTCACAAAGATCTGCATGC 95009 || |||||||||||||||| Sbjct 430 TTGACAAAGATCTGCATGC 448 >seq23693 Length=4026 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || ||| | ||||| ||||| || || Sbjct 2916 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 2975 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || ||||| ||||| || ||||| | ||| ||| ||| Sbjct 2976 GCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTTTGCTTC 3035 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | ||||| | | ||||| || | ||||| || || || || ||||| Sbjct 3036 ACGTTCTCAATCGTGTCCGAGCTCTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGAGTC 3095 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||| ||||||||||||| Sbjct 3096 TTCACGAAGATCTGCATGC 3114 >seq20369 Length=2600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | |||||||| || || ||||| || ||| Sbjct 1815 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATACCCTCCTTG 1874 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||| |||||| ||| ||||| | ||||| || | |||||| Sbjct 1875 TCCTGAATCTTTTGCTTGACATTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATG 1934 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||| |||||||||||| Sbjct 1935 GTCTTACCGGTGAGGGTCTTCACGAAGATCTGCATG 1970 >seq17696 Length=2611 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | |||||||| || || ||||| || ||| Sbjct 786 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATACCCTCCTTG 727 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||| |||||| ||| ||||| | ||||| || | |||||| Sbjct 726 TCCTGAATCTTTTGCTTGACATTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATG 667 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||| |||||||||||| Sbjct 666 GTCTTACCGGTGAGGGTCTTCACGAAGATCTGCATG 631 >seq24868 Length=8702 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | || || ||||| || | ||| || ||| || ||| | ||||| Sbjct 7025 CACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTC 6966 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | | |||||||| ||||| || || || ||||| | Sbjct 6965 GAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTG 6906 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| |||||| ||| ||||| | || || || | |||||||| || Sbjct 6905 AATCTTTTGCTTGACATTCTCGATGGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTT 6846 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 6845 GCCAGTGAGGGTCTTCACGAAGATCTGCAT 6816 >seq17601 Length=6497 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| || | ||| | ||| | || || ||||| || | ||| || ||| | Sbjct 5433 CCACCGCGCAAGCGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 5374 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||||| ||||| || ||| | ||||| | | ||||| || || || Sbjct 5373 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 5314 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||| ||||| | || || ||| ||| ||| ||||| || | ||||| Sbjct 5313 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTC-GCTAGACTCGAC 5255 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || | |||||||| || ||||| || || ||||| ||||||||||||||| Sbjct 5254 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCTT 5203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448144451875680