Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq25491 143 4e-30 seq25167 141 1e-29 seq20982 141 1e-29 seq17234 141 1e-29 seq15590 141 1e-29 seq15589 141 1e-29 >seq25491 Length=13469 Score = 143 bits (158), Expect = 4e-30 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 13378 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 13319 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| |||| || | ||| ||||| Sbjct 13318 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGTGGCGTCCTCAAGGTCTTC 13259 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || | ||| ||||||||||| | ||||| ||| Sbjct 13258 CTCGAGAACGTTATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 13199 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| ||||||| || | || | || ||||| | | || ||||| || Sbjct 13198 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCGCACCCTCTACGGTTTCGG 13140 >seq25167 Length=9547 Score = 141 bits (156), Expect = 1e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 92 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 151 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| |||| || | ||| ||||| Sbjct 152 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGTGGCGTCCTCAAGGTCTTC 211 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || | ||| ||||||||||| | ||||| ||| Sbjct 212 CTCGAGAACGTTATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 271 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 272 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 312 >seq20982 Length=4012 Score = 141 bits (156), Expect = 1e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 3780 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 3839 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| |||| || | ||| ||||| Sbjct 3840 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGTGGCGTCCTCAAGGTCTTC 3899 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || | ||| ||||||||||| | ||||| ||| Sbjct 3900 CTCGAGAACGTTATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 3959 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 3960 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 4000 >seq17234 Length=873 Score = 141 bits (156), Expect = 1e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 641 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 700 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| |||| || | ||| ||||| Sbjct 701 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGTGGCGTCCTCAAGGTCTTC 760 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || | ||| ||||||||||| | ||||| ||| Sbjct 761 CTCGAGAACGTTATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 820 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 821 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 861 >seq15590 Length=2561 Score = 141 bits (156), Expect = 1e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 233 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 174 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| |||| || | ||| ||||| Sbjct 173 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGTGGCGTCCTCAAGGTCTTC 114 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || | ||| ||||||||||| | ||||| ||| Sbjct 113 CTCGAGAACGTTATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 54 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 53 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 13 >seq15589 Length=873 Score = 141 bits (156), Expect = 1e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 233 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 174 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| |||| || | ||| ||||| Sbjct 173 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGTGGCGTCCTCAAGGTCTTC 114 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || | ||| ||||||||||| | ||||| ||| Sbjct 113 CTCGAGAACGTTATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 54 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 53 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79051256128284