Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq25697 98.7 1e-15 seq24868 96.9 3e-15 seq23693 89.7 5e-13 seq21899 86.0 6e-12 seq17601 86.0 6e-12 seq22622 82.4 7e-11 >seq25697 Length=27391 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | |||||| |||| | || || | Sbjct 14539 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 14598 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| || || || || || ||||||||||| Sbjct 14599 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGATAAGGAGGGCATCCCTCCCGATCAG 14658 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || |||||||| | | | | || ||||| ||| Sbjct 14659 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGCACGCTCGCTGACTACAAC 14718 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || |||||| | || || ||||| Sbjct 14719 ATCCAGAAGGAGTCTACTCTTCACCTCGTCCT 14750 >seq24868 Length=8702 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | ||||| || | |||||| |||| | || || Sbjct 6815 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCGTC 6874 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | ||||| ||||||||| ||||| || || || ||||||||||| Sbjct 6875 CGACACCATCGAGAATGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCA 6934 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || || || || ||||| || | | | | | |||||| || Sbjct 6935 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 6994 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || |||| || || || Sbjct 6995 CATCCAGAAGGAGTCGACCCTCCACCTCGTGCT 7027 >seq23693 Length=4026 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| |||| | || || | | Sbjct 3340 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 3281 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| || || || ||||||||||| Sbjct 3280 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 3221 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||||| || ||||| || | | | | || |||||| ||| Sbjct 3220 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACGCTCGCCGACTACAAC 3161 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || || || Sbjct 3160 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCT 3129 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | ||||| || | ||||| |||| | || || Sbjct 3797 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTC 3738 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | || || || ||||| ||||| || || || || || || || Sbjct 3737 CGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 3678 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || |||||| || ||||| || | | | | || ||||| || Sbjct 3677 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCGGACTACAA 3618 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || ||| |||| || ||||| Sbjct 3617 CATCCATAAGGAGTCGACTCTCCACCTCGTCCT 3585 >seq21899 Length=10926 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| |||| | || || | Sbjct 1790 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTTGAGTCGTCC 1849 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||||||| ||||| || || || || || ||||| Sbjct 1850 GACACCATCGAGAATGTCAAGCAAAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAG 1909 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || |||||| || || || |||| | | || ||||| ||| Sbjct 1910 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTCGCGGACTACAAC 1969 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || ||||| Sbjct 1970 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCT 2001 >seq17601 Length=6497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | |||||| |||| | || || | | Sbjct 5207 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTAGC 5266 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| ||||| || || || || || Sbjct 5267 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAG 5326 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | | |||||| ||| Sbjct 5327 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 5386 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || || || Sbjct 5387 ATCCAGAAGGAGTCCACGCTCCACCTCGTGCT 5418 >seq22622 Length=4454 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || || || | |||||| |||| | || || | Sbjct 613 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTAG 672 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| |||||| | || || || ||||| ||||| || || || ||||||||||| Sbjct 673 CGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 732 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | | ||||| || ||||| || | | | || |||||| || Sbjct 733 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 792 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || |||| || ||||| Sbjct 793 CATCCAGAAGGAGTCAACGCTCCACCTCGTCCT 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478505709863360