Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq24868 100 2e-16 seq25697 96.9 3e-15 seq20369 96.9 3e-15 seq17696 96.9 3e-15 seq23693 95.1 1e-14 seq17601 95.1 1e-14 seq15340 95.1 1e-14 seq21899 89.7 4e-13 seq25321 87.8 2e-12 seq22622 87.8 2e-12 seq18580 82.4 7e-11 >seq24868 Length=8702 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | ||||| || | || ||| |||| || ||| | Sbjct 6815 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCGTC 6874 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | ||||| ||||||||| ||||| || ||||| ||||||||||| Sbjct 6875 CGACACCATCGAGAATGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCA 6934 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || || ||||| ||||| || | | | | | | ||| || || Sbjct 6935 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 6994 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 6995 CATCCAGAAGGAGTCGAC 7012 >seq25697 Length=27391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| | | Sbjct 14539 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 14598 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| || || || ||||| ||||||||||| Sbjct 14599 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGATAAGGAGGGCATCCCTCCCGATCAG 14658 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| |||||||| | | | || || || ||| Sbjct 14659 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGCACGCTCGCTGACTACAAC 14718 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || || ||||| |||| Sbjct 14719 ATCCAGAAGGAGTCTACTCTTCA 14741 >seq20369 Length=2600 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| | | Sbjct 1969 ATGCAGATCTTCGTGAAGACCCTCACCGGTAAGACCATCACCCTCGAGGTCGAGTCGTCC 1910 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||||||| ||||| || || || || || ||||| Sbjct 1909 GACACCATCGAGAATGTCAAGCAAAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAG 1850 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||||||||| ||||| || | | | | | || || || ||| Sbjct 1849 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCTGACTACAAC 1790 Query 24171 ATTCAAAA 24178 || || || Sbjct 1789 ATCCAGAA 1782 >seq17696 Length=2611 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| | | Sbjct 632 ATGCAGATCTTCGTGAAGACCCTCACCGGTAAGACCATCACCCTCGAGGTCGAGTCGTCC 691 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||||||| ||||| || || || || || ||||| Sbjct 692 GACACCATCGAGAATGTCAAGCAAAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAG 751 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||||||||| ||||| || | | | | | || || || ||| Sbjct 752 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCTGACTACAAC 811 Query 24171 ATTCAAAA 24178 || || || Sbjct 812 ATCCAGAA 819 >seq23693 Length=4026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| ||| | Sbjct 3340 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 3281 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || ||||| ||||||||||| Sbjct 3280 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 3221 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || |||||||| ||||| || Sbjct 3220 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGA 3186 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | ||||| || | || || |||| |||||| | Sbjct 3797 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTC 3738 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || || ||||| ||||| || ||||| || || || || Sbjct 3737 CGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 3678 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | | | || || || || Sbjct 3677 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCGGACTACAA 3618 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 3617 CATCCATAAGGAGTCGAC 3600 >seq17601 Length=6497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| | | | Sbjct 5207 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTAGC 5266 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| |||||||| || || || || Sbjct 5267 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAG 5326 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | | ||| || ||| Sbjct 5327 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 5386 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 5387 ATCCAGAAGGAGTCCAC 5403 >seq15340 Length=11482 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || || ||||||||||| | | Sbjct 446 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAAGTCGAGTCGTCC 387 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||||| ||||| || ||||| |||||||| || Sbjct 386 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 327 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | | ||| || ||| Sbjct 326 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 267 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 266 ATCCAGAAGGAGTCSAC 250 >seq21899 Length=10926 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| || ||| | | Sbjct 1790 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTTGAGTCGTCC 1849 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||||||| ||||| || || || || || ||||| Sbjct 1850 GACACCATCGAGAATGTCAAGCAAAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAG 1909 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | ||||| | || ||||||||| || || |||| Sbjct 1910 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATG 1946 >seq25321 Length=10237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| | | Sbjct 9680 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 9739 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||||| ||||| || || || ||||||||||| Sbjct 9740 GACACGATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAG 9799 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||| ||||| || | | | | | ||| || ||| Sbjct 9800 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACTCTGGCCGACTACAAC 9859 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || || || || |||| Sbjct 9860 ATCCAGAAGGAGTCGACCCTTCA 9882 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| | | Sbjct 9339 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTCGAGTCGTCC 9398 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||||| ||||| || || || ||||||||||| Sbjct 9399 GACACGATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAG 9458 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | ||||| | || |||||||| ||||| || Sbjct 9459 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGA 9493 >seq22622 Length=4454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| |||| |||||| | | Sbjct 613 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTAG 672 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| |||||| | || || || ||||| ||||| || ||||| ||||||||||| Sbjct 673 CGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 732 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | |||||||| ||||| || | | | | || ||| || || Sbjct 733 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 792 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 793 CATCCAGAAGGAGTCAAC 810 >seq18580 Length=2690 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| | | Sbjct 2422 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 2481 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || || || || || || || Sbjct 2482 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 2541 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | || ||| || ||| Sbjct 2542 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 2601 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || || || || |||| Sbjct 2602 ATCCAGAAGGAGTCGACCCTTCA 2624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429798778939140