Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq14080 127 1e-24 seq24997 105 4e-18 seq23693 100 2e-16 seq24868 96.9 2e-15 seq6461 89.7 3e-13 seq5394 89.7 3e-13 seq3693 89.7 3e-13 seq25702 82.4 5e-11 >seq14080 Length=767 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 299 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 240 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 239 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 205 >seq24997 Length=21011 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 19120 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 19061 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 19060 GCTGACAATATTTAGCCTT 19042 >seq23693 Length=4026 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| |||||| || || ||||| |||| | || |||| || | || Sbjct 3366 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGCTGC 3425 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || ||||| || ||||| | |||| |||||| |||||| || ||| Sbjct 3426 TTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGGATCTTT 3485 Query 38235 TGCTTCACATTCTGGACAGTAT--CTCCACTTTCAACTTCTAATGTAATAGTTTTACCCG 38292 |||||||| |||| || |||| ||| || || || || | ||||| || ||||| | Sbjct 3486 TGCTTCACGTTCTCGATGGTATCGCTCGAC--TCGACCTCGAGGGTAATGGTCTTACCGG 3543 Query 38293 TCAAGGTTTTCACGAATATCTGCATG 38318 ||| ||| || ||||| ||||||||| Sbjct 3544 TCAGGGTCTTGACGAAGATCTGCATG 3569 >seq24868 Length=8702 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || ||| | ||| | || || ||| |||||| || || ||||| |||| Sbjct 7272 TACCGCCACGCAGACGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAG 7213 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || |||| || | || || ||||| || || ||||| || || || | || Sbjct 7212 CGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGGG 7153 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTC 38266 ||| ||| || |||||| || ||||||||||| |||| || || | ||| || || Sbjct 7152 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTCGAC--TC 7095 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || || |||||||| | ||| || ||||| |||||||| Sbjct 7094 GACCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 7044 >seq6461 Length=65 Score = 89.7 bits (98), Expect = 3e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 59 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 3 >seq5394 Length=64 Score = 89.7 bits (98), Expect = 3e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 8 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 64 >seq3693 Length=126 Score = 89.7 bits (98), Expect = 3e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 57 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 1 >seq25702 Length=8093 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||| || | | ||| |||| || | || || ||||| || Sbjct 2705 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 2764 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || || || || || | ||||| ||| || |||||| || || |||||||| || Sbjct 2765 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTYTGCTTCACGTT 2824 Query 38246 CTGGACAGTATC--TCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTC 38303 || || || || || ||| | || || | || || || || || |||| ||| ||| Sbjct 2825 CTCGATCGTGTCGCTCGACT--CGACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTC 2882 Query 38304 ACGAATATCTGCATG 38318 ||||| ||||||||| Sbjct 2883 ACGAAGATCTGCATG 2897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334840296158228