Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq25559 98.7 1e-15 >seq25559 Length=72922 Score = 98.7 bits (108), Expect = 1e-15 Identities = 387/604 (64%), Gaps = 5/604 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||||||||||||| || | || ||||| || |||| || || ||||| | | Sbjct 47733 GCACGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATTTCGTTACTGAAGGCCAG 47674 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaa 93209 || || | || || || ||||||||||| || | || |||| || || || || || | Sbjct 47673 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-TGGAGCAGAAGCTGCCCGAGAAGA 47615 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG--GAATTAC- 93266 | || || || ||||| || || | || | ||| |||||||| | || | | | Sbjct 47614 AGATGCCCTCGACGGCAGCGAACCCGACGAGACGCTCGGCAAAGGTCTCGACGCCCTCCT 47555 Query 93267 TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 || ||||||| | ||||| ||||| || |||| | | || | || ||||| | Sbjct 47554 TGTTGATCCACCGCATGGCCCAGTCGGCCTTCCTCTTGACCGAGGGCACGGTGTCGATGG 47495 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 || || |||| || |||| | | || | ||| || ||||| | || || | Sbjct 47494 CGCGGAAGAGGTGGTCCTTCTCGACGGGGTCCTTGACGTACGTGTCGATGAGGAGCGAGT 47435 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 |||| || || |||| ||||| || || || ||||| |||||||| || | || |||| Sbjct 47434 ACATCTCCGAGTGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCCG 47375 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 | |||||| || | || | | |||| || || ||| || || ||| | Sbjct 47374 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCCGCGACGATGCCGTCGCTGG 47315 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 | || || || || | | ||||| || || || |||| || | | ||| ||| Sbjct 47314 CGGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTGAGCGAGGCCC 47255 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | | | | || || ||||| || ||| | ||||| ||||| || || || | Sbjct 47254 AGTGGTTCATGTCCGCGCTCAGGTCGACCTCCTCGGCGGTCCAGAACGAAGCCTCGGCCT 47195 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGT 93686 | |||||||| ||||| ||| || | |||| || || | || || || || |||| Sbjct 47194 TCTTGTACATCTCCCAGATGCGCTGGTGACGAATCGGGAACAGCACGAAGCGGTTGGGGT 47135 Query 93687 TATC 93690 | || Sbjct 47134 TCTC 47131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556678511617120