Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq22622 87.8 1e-12 seq15340 87.8 1e-12 seq24868 86.0 5e-12 seq17601 86.0 5e-12 seq18353 84.2 2e-11 seq25702 82.4 6e-11 seq23693 82.4 6e-11 seq21899 82.4 6e-11 seq21073 82.4 6e-11 >seq22622 Length=4454 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || ||||| ||||||||| |||||||| || || | || Sbjct 831 AGACGGAGGACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGG 772 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||| ||||| || |||||||||||||| || | || ||| Sbjct 771 CCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCC 712 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | || |||| ||| |||| || Sbjct 711 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTAGACTCGACCTCGAGGGT 653 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || || ||||| || || ||||| ||||| |||||| Sbjct 652 GATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | ||| || || || || || || ||| ||||||||| |||||||| || Sbjct 1528 GAAGCCACCGCGCAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1469 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||| || |||| || | ||||||||||| || ||||| |||||||| || Sbjct 1468 GGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGG 1409 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATT 34075 || | || ||| |||||| || || ||||| | | ||| | |||| | || | Sbjct 1408 AGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTATCGCTCGACT 1350 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | |||| ||| || || || ||||| || || || || ||||| ||||| Sbjct 1349 CAACCTCGAGCGTGATGGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 1298 >seq15340 Length=11482 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || || || || ||||||||| |||||||| || || Sbjct 219 ACCGCCGCGCAGGCGGAGSACGAGGTGGAGSGTSGACTCCTTCTGGATGTTGTAGTCGGC 278 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | ||||||||||| || || || |||||||| || || Sbjct 279 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGG 338 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || ||| |||||| || || ||||| | | ||| | | || | || ||| Sbjct 339 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGGACGACTCGA 397 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| ||| || || || || || || || || |||||||| ||||| Sbjct 398 CTTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 446 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||| || || |||||| ||||||||| |||||||| || ||| Sbjct 676 CCGCCGCGCAGGCGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 735 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| ||||| || || ||||||||||| ||| || Sbjct 736 AGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCCGGAGGG 795 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||||| | | ||| | | || | || ||| Sbjct 796 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTGTCGCTGGACTCGAC 854 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| || || || || || || || || || || ||||| |||||| Sbjct 855 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATT 903 >seq24868 Length=8702 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || ||||| || || |||||| ||||||||| |||||||| || || Sbjct 7271 ACCGCCACGCAGACGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 7212 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | ||||| ||||| || || ||||||||||| ||| || Sbjct 7211 GAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGGGG 7152 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || |||||||| Sbjct 7151 GATGCCCTCCTTGTCCTGGATCTTTTGCTT 7122 >seq17601 Length=6497 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | || || ||||| || || |||||| ||||||||| |||||||| || || Sbjct 5434 ACCACCGCGCAAGCGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 5375 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | ||||||||||| || || || |||||||| ||| || Sbjct 5374 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 5315 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || || |||||| || || ||||| | | ||| | | || |||| ||| Sbjct 5314 GATGCCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTAGACTCGA 5256 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || || || ||||| ||||| ||||| Sbjct 5255 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 5207 >seq18353 Length=6497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || ||||| || || || || ||||||||| |||||||| || ||| Sbjct 837 CCTCCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 896 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| || || || || ||||||||||| ||| || Sbjct 897 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 956 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051 | || ||| |||||| || |||||||||| Sbjct 957 ATGCCCTCCTTGTCCTGGATCTTTTGCTTAA 987 >seq25702 Length=8093 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | ||| || || || || || |||||| ||||||||| |||||||| || Sbjct 2115 GAAGCCGCCGCGCAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 2174 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 || | || |||| || | ||||||||||| || ||||| |||||||| ||| Sbjct 2175 AGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGG 2234 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 || | | ||| |||||| || |||||||| Sbjct 2235 GGGAATACCCTCCTTGTCCTGGATCTTTTGCTT 2267 >seq23693 Length=4026 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | ||| || || || || || || || ||||||||| |||||||| || Sbjct 2882 GAAGCCACCGCGCAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 2941 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||| || |||| || | |||||||| || || || ||||||||||| || Sbjct 2942 GGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGG 3001 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGAT- 34074 || | | ||| |||||| ||| |||||||| | | |||| | | || | || | Sbjct 3002 AGGGATACCCTCCTTGTCCTGAATCTTTTGCTTCA-CGTTCTCAATCGTGTCCG-AGCTC 3059 Query 34075 TCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| |||| || || || || ||||| || || ||||| ||||| ||||| Sbjct 3060 TCGACCTCGAGGGTGATAGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 3112 >seq21899 Length=10926 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || ||| ||||||||| |||||||| || || | || Sbjct 2007 AGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 1948 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||||||||| || ||||| |||||||||||| || | | ||| Sbjct 1947 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATACCCTCC 1888 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| ||| |||||||| Sbjct 1887 TTGTCCTGAATCTTTTGCTT 1868 >seq21073 Length=984 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | ||| || || || || || || || ||||||||| |||||||| || Sbjct 754 GAAGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 813 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||| || |||| || | ||||||||||| || || || |||||||| ||| Sbjct 814 GGCCAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGG 873 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATT 34075 || | || ||| |||||| || || ||||| | | ||| | |||| | || | Sbjct 874 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTATCGCTCGACT 932 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || |||| || || || || ||||| || || || || ||||| ||||| Sbjct 933 CGACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396935671082776