Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq25697 89.7 5e-13 seq25702 86.0 6e-12 seq25321 86.0 6e-12 seq17601 86.0 6e-12 seq15340 84.2 2e-11 >seq25697 Length=27391 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || || || || ||||| ||||| || || ||| | Sbjct 15221 CCACCGCGCAGACGAAGGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCG 15162 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || ||||||||||| ||| Sbjct 15161 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGA 15102 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | |||||||| |||||||| Sbjct 15101 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGGACGACTCGAC 15043 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || |||||||| || || || || || || ||||| Sbjct 15042 CTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 14995 >seq25702 Length=8093 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || || ||| || ||| | || || Sbjct 2688 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGACCGTCCTCG 2747 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | |||| || ||||||||||| || ||||| || || || || Sbjct 2748 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 2807 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || || | || | || | |||||| |||||||| |||||||| | || || Sbjct 2808 ATCTTYTGCTTCA-CGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGAGTGATGGTCTT 2866 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || || || || || ||||| Sbjct 2867 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 2896 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || ||||| || ||||| ||||| || || || | Sbjct 2119 CCGCCGCGCAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCG 2178 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || || | || || || ||| | |||| || ||||||||||| ||| Sbjct 2179 AGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 2238 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || ||||| || | || | || | |||||| |||||||| Sbjct 2239 ATACCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATCGTGTCGCTCGACTCGAC 2297 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || || || || || || || || || || ||||| Sbjct 2298 CTCGAGAGTGATGGTCTTACCCGTGAGCGTCTTGACGAAGATCTGCAT 2345 >seq25321 Length=10237 Score = 86.0 bits (94), Expect = 6e-12 Identities = 164/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| || || || || || ||||| ||||| || || ||| Sbjct 10137 ATGCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 10078 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | || | || ||||||||||| Sbjct 10077 GCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGG 10018 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || ||||| || | || | || | ||| ||| ||||| Sbjct 10017 GGAATACCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATGGTATCGCTCGACTC 9959 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||| |||||||| | || |||||||| || || || || || || ||||| ||| || Sbjct 9958 GACCTCGAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATACCGCCAC 9900 >seq17601 Length=6497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || ||||| || ||||| ||||| || || ||| | ||| || || Sbjct 5416 CACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTC 5357 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | || | || ||||||||||| || |||||||| || || || Sbjct 5356 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTG 5297 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || || | || | || | ||||||| ||||||||| ||||| || | || | Sbjct 5296 GATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTAGACTCGACCTCGAGGGTGATGGTCT 5238 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || || || || || || ||||| Sbjct 5237 TGCCAGTGAGGGTCTTCACGAAGATCTGCAT 5207 >seq15340 Length=11482 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || || || || ||||| ||||| || || ||| Sbjct 220 CCGCCGCGCAGGCGGAGSACGAGGTGGAGSGTSGACTCCTTCTGGATGTTGTAGTCGGCC 279 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || |||||||| || || Sbjct 280 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 339 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | |||||||| |||||||| Sbjct 340 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGGACGACTCGAC 398 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || | || ||||| || || || || ||||| || ||||| Sbjct 399 TTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 446 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| || || ||||| || ||||| ||||| || || ||| Sbjct 673 ATGCCGCCGCGCAGGCGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCG 732 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | || | || ||||||||||| Sbjct 733 GCCAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCCGGA 792 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || || | || | || | ||||||| ||||| Sbjct 793 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTGTCGCTGGACTC 851 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 ||| ||||| || | || ||||| || || || || || || || ||||| || Sbjct 852 GACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATTGC 905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451855236752480