Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq21899 96.9 3e-15 seq25702 91.5 1e-13 seq20369 91.5 1e-13 seq17696 91.5 1e-13 seq24868 89.7 4e-13 seq23693 84.2 2e-11 >seq21899 Length=10926 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || | || | || | || |||| |||| Sbjct 1992 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCATCCTCCAGCTGC 1933 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| ||||||| ||| | ||||||||||| ||||||| Sbjct 1932 TTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTT 1873 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || ||| | | | || |||| ||| ||||| | || || || || ||||| Sbjct 1872 TGCTTGACATTCTCGATGGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTACCCGTG 1813 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 1812 AGGGTCTTGACGAAGATCTGCAT 1790 >seq25702 Length=8093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || || ||||| |||| || | ||| |||| || | |||| Sbjct 2143 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGC 2202 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| || |||| ||||| ||||||||||| |||||| Sbjct 2203 TTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTT 2262 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || || ||| ||||| | || || || || ||||| Sbjct 2263 TGCTTCACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGAGTGATGGTCTTACCCGTG 2322 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 2323 AGCGTCTTGACGAAGATCTGCAT 2345 >seq20369 Length=2600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| |||| || | || |||| || | |||||| ||||| || ||| Sbjct 1782 TTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 1841 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 || ||||| ||||||| ||| | ||||||||||| ||||||||| || ||| | Sbjct 1842 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTTGACATTCTCG 1901 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | | || |||| ||| ||||| | || || || || || || | || || || || Sbjct 1902 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTCACGAAG 1961 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 1962 ATCTGCAT 1969 >seq17696 Length=2611 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| |||| || | || |||| || | |||||| ||||| || ||| Sbjct 819 TTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 760 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 || ||||| ||||||| ||| | ||||||||||| ||||||||| || ||| | Sbjct 759 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTTGACATTCTCG 700 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | | || |||| ||| ||||| | || || || || || || | || || || || Sbjct 699 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTCACGAAG 640 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 639 ATCTGCAT 632 >seq24868 Length=8702 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||| | || |||||| ||| || || || ||||| |||| Sbjct 7270 CCGCCACGCAGACGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCG 7211 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||||||||| || || || ||||| || |||| ||| Sbjct 7210 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 7151 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||||| || || | | | || || ||| ||| Sbjct 7150 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTCGACTCGACC 7091 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || ||||| | || || || || |||||||| Sbjct 7090 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 7044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || | || | || |||| || | ||||||||| || || Sbjct 7007 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 6948 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||| | || | |||||||||||| ||||||||| || ||| Sbjct 6947 GATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACATT 6888 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||| | || || || || || || | || || || Sbjct 6887 CTCGATGGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 6828 Query 48755 AAAAATCTGCATCGTGTGT 48773 || |||||||| || ||| Sbjct 6827 GAAGATCTGCATTGTCTGT 6809 >seq23693 Length=4026 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/217 (69%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || | || | || |||| || | |||||| ||||| || Sbjct 3605 CTCCTTATGGATGTTGTAGTCCGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 3664 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || |||| ||| | |||||||||||| ||||| || || || Sbjct 3665 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 3724 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||| | ||| || || || || || | || || || Sbjct 3725 CTCGATGGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTCAC 3784 Query 48755 AAAAATCTGCATCGTGTGTACGTGTATGTCGAGCGCG 48791 || |||||||| || ||| ||| ||| |||||| Sbjct 3785 GAAGATCTGCATTGTCTGT---TGTGTGTGTAGCGCG 3818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380816017574724