Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq25087 109 1e-18 seq19206 109 1e-18 seq19205 109 1e-18 >seq25087 Length=6214 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 168271 AACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGG 168330 ||||||||||||||| ||||||||||| ||| |||| ||| || | || ||||| Sbjct 4490 AACCCTTGACGCACAGGACCTGCTTGAGCGTGTGCACGACCTCGACGAGGTCCGACTGGG 4549 Query 168331 CCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGT 168390 || ||||||| ||||| |||||| || |||||| ||||| | || | | ||| Sbjct 4550 CCAGCATGACGGCGTCGATGTCCTTGTAGGCGCGCGGCGTTTCGTCAAGCAGGTCGGCGT 4609 Query 168391 CCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTCT 168450 | | ||||||||||| |||| |||| | | | ||| ||| ||| | || ||| || Sbjct 4610 CGTGTCGGCACTCGACTCCCTGCGTGTCGTGCAGGTGGTCGGCCATCGTGAACAGCCGCT 4669 Query 168451 TCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCA 168493 | ||||| ||||| || || || || ||||||||||| Sbjct 4670 TGGCCGCGCCGCGCGAGTGCACTCGCCCCGCTCCGTGGCTGCA 4712 Score = 93.3 bits (102), Expect = 8e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 168522 CCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAGTTCGTCCTTC 168581 || ||||||||| | |||||||||||| || || || |||||||| || ||| ||||| Sbjct 4797 CCTCGCACGATGTAGCTCTTGGCGCCCATGGAGCCGGGGATGATGCCCAGCTCGCCCTTC 4856 Query 168582 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTGGCGTTC 168637 ||| ||| ||||| ||||| ||||| | | |||||||||| ||||| |||| Sbjct 4857 CTCGCGCTCACGGCGCCTTTGCGCGTCACATACAGGTCCTCGCCGTAGTGGTGTTC 4912 >seq19206 Length=6174 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 168271 AACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGG 168330 ||||||||||||||| ||||||||||| ||| |||| ||| || | || ||||| Sbjct 3351 AACCCTTGACGCACAGGACCTGCTTGAGCGTGTGCACGACCTCGACGAGGTCCGACTGGG 3410 Query 168331 CCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGT 168390 || ||||||| ||||| |||||| || |||||| ||||| | || | | ||| Sbjct 3411 CCAGCATGACGGCGTCGATGTCCTTGTAGGCGCGCGGCGTTTCGTCAAGCAGGTCGGCGT 3470 Query 168391 CCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTCT 168450 | | ||||||||||| |||| |||| | | | ||| ||| ||| | || ||| || Sbjct 3471 CGTGTCGGCACTCGACTCCCTGCGTGTCGTGCAGGTGGTCGGCCATCGTGAACAGCCGCT 3530 Query 168451 TCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCA 168493 | ||||| ||||| || || || || ||||||||||| Sbjct 3531 TGGCCGCGCCGCGCGAGTGCACTCGCCCCGCTCCGTGGCTGCA 3573 Score = 93.3 bits (102), Expect = 8e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 168522 CCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAGTTCGTCCTTC 168581 || ||||||||| | |||||||||||| || || || |||||||| || ||| ||||| Sbjct 3658 CCTCGCACGATGTAGCTCTTGGCGCCCATGGAGCCGGGGATGATGCCCAGCTCGCCCTTC 3717 Query 168582 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTGGCGTTC 168637 ||| ||| ||||| ||||| ||||| | | |||||||||| ||||| |||| Sbjct 3718 CTCGCGCTCACGGCGCCTTTGCGCGTCACATACAGGTCCTCGCCGTAGTGGTGTTC 3773 >seq19205 Length=6178 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 168271 AACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGG 168330 ||||||||||||||| ||||||||||| ||| |||| ||| || | || ||||| Sbjct 3351 AACCCTTGACGCACAGGACCTGCTTGAGCGTGTGCACGACCTCGACGAGGTCCGACTGGG 3410 Query 168331 CCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGT 168390 || ||||||| ||||| |||||| || |||||| ||||| | || | | ||| Sbjct 3411 CCAGCATGACGGCGTCGATGTCCTTGTAGGCGCGCGGCGTTTCGTCAAGCAGGTCGGCGT 3470 Query 168391 CCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTCT 168450 | | ||||||||||| |||| |||| | | | ||| ||| ||| | || ||| || Sbjct 3471 CGTGTCGGCACTCGACTCCCTGCGTGTCGTGCAGGTGGTCGGCCATCGTGAACAGCCGCT 3530 Query 168451 TCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCA 168493 | ||||| ||||| || || || || ||||||||||| Sbjct 3531 TGGCCGCGCCGCGCGAGTGCACTCGCCCCGCTCCGTGGCTGCA 3573 Score = 93.3 bits (102), Expect = 8e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 168522 CCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAGTTCGTCCTTC 168581 || ||||||||| | |||||||||||| || || || |||||||| || ||| ||||| Sbjct 3658 CCTCGCACGATGTAGCTCTTGGCGCCCATGGAGCCGGGGATGATGCCCAGCTCGCCCTTC 3717 Query 168582 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTGGCGTTC 168637 ||| ||| ||||| ||||| ||||| | | |||||||||| ||||| |||| Sbjct 3718 CTCGCGCTCACGGCGCCTTTGCGCGTCACATACAGGTCCTCGCCGTAGTGGTGTTC 3773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895473170868960