Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq25087 127 3e-24 seq19206 127 3e-24 seq19205 127 3e-24 >seq25087 Length=6214 Score = 127 bits (140), Expect = 3e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 135408 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 135467 ||||| ||||| ||||| |||||||| ||||| |||| || ||||||||| ||||||| Sbjct 4492 CCCTTGACGCACAGGACCTGCTTGAGCGTGTGCACGACCTCGACGAGGTCCGACTGGGCC 4551 Query 135468 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 135527 |||||| |||||||||||||||||||| ||| ||||||| | || | | ||||| Sbjct 4552 AGCATGACGGCGTCGATGTCCTTGTAGGCGCGCGGCGTTTCGTCAAGCAGGTCGGCGTCG 4611 Query 135528 TTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTG 135587 | |||||||| || |||| ||| | | | ||||| ||| ||||| | |||| Sbjct 4612 TGTCGGCACTCGACTCCCTGCGTGTCGTGCAGGTGGTCGGCCATCGTGAACAGCCGCTTG 4671 Query 135588 GCC 135590 ||| Sbjct 4672 GCC 4674 Score = 89.7 bits (98), Expect = 7e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 136035 CCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCC 136094 ||||| ||||||| || ||||||||||| ||| ||||||| ||| || || | |||| Sbjct 5408 CCGATTCTGTTGCCCACTCCGCGCGAGCCGCTGTGAAGCATCAGCCACACACGATCGTCC 5467 Query 136095 TCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 136126 ||||| || || | |||||||||||||||||| Sbjct 5468 TCGTCCAGACACATCTCGATGAAGTGGTTGCC 5499 >seq19206 Length=6174 Score = 127 bits (140), Expect = 3e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 135408 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 135467 ||||| ||||| ||||| |||||||| ||||| |||| || ||||||||| ||||||| Sbjct 3353 CCCTTGACGCACAGGACCTGCTTGAGCGTGTGCACGACCTCGACGAGGTCCGACTGGGCC 3412 Query 135468 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 135527 |||||| |||||||||||||||||||| ||| ||||||| | || | | ||||| Sbjct 3413 AGCATGACGGCGTCGATGTCCTTGTAGGCGCGCGGCGTTTCGTCAAGCAGGTCGGCGTCG 3472 Query 135528 TTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTG 135587 | |||||||| || |||| ||| | | | ||||| ||| ||||| | |||| Sbjct 3473 TGTCGGCACTCGACTCCCTGCGTGTCGTGCAGGTGGTCGGCCATCGTGAACAGCCGCTTG 3532 Query 135588 GCC 135590 ||| Sbjct 3533 GCC 3535 Score = 89.7 bits (98), Expect = 7e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 136035 CCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCC 136094 ||||| ||||||| || ||||||||||| ||| ||||||| ||| || || | |||| Sbjct 4269 CCGATTCTGTTGCCCACTCCGCGCGAGCCGCTGTGAAGCATCAGCCACACACGATCGTCC 4328 Query 136095 TCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 136126 ||||| || || | |||||||||||||||||| Sbjct 4329 TCGTCCAGACACATCTCGATGAAGTGGTTGCC 4360 >seq19205 Length=6178 Score = 127 bits (140), Expect = 3e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 135408 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 135467 ||||| ||||| ||||| |||||||| ||||| |||| || ||||||||| ||||||| Sbjct 3353 CCCTTGACGCACAGGACCTGCTTGAGCGTGTGCACGACCTCGACGAGGTCCGACTGGGCC 3412 Query 135468 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 135527 |||||| |||||||||||||||||||| ||| ||||||| | || | | ||||| Sbjct 3413 AGCATGACGGCGTCGATGTCCTTGTAGGCGCGCGGCGTTTCGTCAAGCAGGTCGGCGTCG 3472 Query 135528 TTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTG 135587 | |||||||| || |||| ||| | | | ||||| ||| ||||| | |||| Sbjct 3473 TGTCGGCACTCGACTCCCTGCGTGTCGTGCAGGTGGTCGGCCATCGTGAACAGCCGCTTG 3532 Query 135588 GCC 135590 ||| Sbjct 3533 GCC 3535 Score = 89.7 bits (98), Expect = 7e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 136035 CCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCC 136094 ||||| ||||||| || ||||||||||| ||| ||||||| ||| || || | |||| Sbjct 4269 CCGATTCTGTTGCCCACTCCGCGCGAGCCGCTGTGAAGCATCAGCCACACACGATCGTCC 4328 Query 136095 TCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 136126 ||||| || || | |||||||||||||||||| Sbjct 4329 TCGTCCAGACACATCTCGATGAAGTGGTTGCC 4360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700215509394720