Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq18436 107 1e-17 seq26185 105 4e-17 seq25757 98.7 6e-15 seq15521 95.1 8e-14 seq23693 93.3 3e-13 seq25344 89.7 3e-12 seq24868 89.7 3e-12 seq22243 89.7 3e-12 seq20910 89.7 3e-12 seq21899 87.8 1e-11 seq20369 87.8 1e-11 seq17696 87.8 1e-11 seq25831 86.0 4e-11 seq23033 86.0 4e-11 seq21898 86.0 4e-11 >seq18436 Length=11956 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || || || | ||||||||||| ||| | ||||| || ||||| ||||| Sbjct 6315 AAGATGGCCTACCAGGCGGCCAAAGGAATGCACTTCCTCCACTCGTCAGGCATCGTCCAC 6256 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | || |||||||| || || || ||||| || | || |||||||| || ||||| || Sbjct 6255 CGCGACCTCAAGTCGCTCAACCTGCTACTCGACGCGAAGTGGAATGTCAAGGTGAGCGAC 6196 Query 878246 TTTGGTTTGACAAAGTT 878262 |||||| |||| ||||| Sbjct 6195 TTTGGTCTGACCAAGTT 6179 >seq26185 Length=120464 Score = 105 bits (116), Expect = 4e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 878125 TAAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCA 878184 ||||||||| || || ||||| || || ||||| ||| | ||||| || ||||| ||||| Sbjct 78476 TAAGATGGCCTACCAGGCATCGAAGGGCATGCACTTCCTCCACTCGTCGGGCATCGTCCA 78535 Query 878185 TAGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGA 878244 | ||||||||||| || || || || || || || || ||||| || || ||||| || Sbjct 78536 CCGCGATCTCAAGTCGCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGTGAGCGA 78595 Query 878245 TTTTGGTTTGACAAAGTT 878262 |||||| | || ||||| Sbjct 78596 CTTTGGTCTCACCAAGTT 78613 >seq25757 Length=563726 Score = 98.7 bits (108), Expect = 6e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || ||||| | || || ||||||||| | |||||||| ||||| || || Sbjct 5763 AAGATGGCCTACCAAGCGGCCAAGGGCATGCATTTCCTCCACTCATCGGGCATCGTGCAC 5704 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | ||||| ||||| || || || || || || || || ||||| || || || || Sbjct 5703 CGCGATCTTAAGTCGCTCAACCTCCTGCTCGACTCCAAGTGGAACGTCAAGGTCTCCGAC 5644 Query 878246 TTTGGTTTGACAAAGTTTA 878264 ||||||||||| ||||||| Sbjct 5643 TTTGGTTTGACCAAGTTTA 5625 >seq15521 Length=6848 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || || || || || || ||||| ||| | |||||||| ||||| || ||| Sbjct 4059 AAGATGGCCTACCAGGCCTCCAAGGGCATGCACTTCCTCCACTCATCGGGCATCGTGCAT 4118 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | ||||||||||| || || || || || || || || ||||| || || ||| || Sbjct 4119 CGCGATCTCAAGTCGCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGTGTCCGAC 4178 Query 878246 TTTGGTTTGACAAAGTT 878262 |||||| | || ||||| Sbjct 4179 TTTGGTCTCACCAAGTT 4195 >seq23693 Length=4026 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| ||||| || || || || || || |||||||| || || |||||| Sbjct 2958 TCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTG 3017 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAAT 480736 || ||||||||||| || || ||||| || || | | | | | || ||||| || Sbjct 3018 TCCTGAATCTTTTGCTTCACGTTCTCAATCGTGTCCGAGCTCTCGA-CCTCGAGGGTGAT 3076 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || |||||||||||||| ||||| || || Sbjct 3077 AGTCTTGCCGGTGAGAGTCTTCACGAAGATCTG 3109 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| || || | | || || || ||||| ||||| || || || || || Sbjct 3390 TTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGC 3449 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||||||||| || ||||||||||| || |||||||| || || || || ||||| Sbjct 3450 TGATCAGGAGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCG 3509 Query 480714 GT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || |||||||| || |||||||| || ||||| ||||| || || Sbjct 3510 CTCGACTCGA-CCTCGAGGGTAATGGTCTTACCGGTCAGGGTCTTGACGAAGATCTG 3565 >seq25344 Length=10962 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || || || | || || ||||| ||| | ||||| || ||||| || ||| Sbjct 2450 AAGATGGCCTACCAGGCGGCCAAGGGCATGCACTTCCTCCACTCGTCAGGCATCGTGCAT 2391 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | ||||||||||| || || || || || || | || ||||| || || ||||| || Sbjct 2390 CGCGATCTCAAGTCGCTCAACCTGCTGCTTGACGCCAAGTGGAACGTCAAGGTGAGCGAC 2331 Query 878246 TTTGGTTTGACAAAGTT 878262 |||||| | || ||||| Sbjct 2330 TTTGGTCTCACCAAGTT 2314 >seq24868 Length=8702 Score = 89.7 bits (98), Expect = 3e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| ||||| || || ||||| || ||||| ||||| || || |||||| Sbjct 6970 TCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTG 6911 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || ||||||||||| |||||| || || || || | | | || || ||||| || Sbjct 6910 TCCTGAATCTTTTGCTTGACATTCTCGATGGTGTCGGACGACTCAA-CCTCGAGGGTGAT 6852 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||| || || Sbjct 6851 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 6819 >seq22243 Length=29089 Score = 89.7 bits (98), Expect = 3e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 878123 ATTAAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTC 878182 || ||||| ||||||||||| | || || ||||| ||| | |||||||| ||||| || Sbjct 5726 ATCAAGATCGCATATCAAGCGGCCAAGGGCATGCACTTCCTCCACTCATCTGGCATCGTG 5667 Query 878183 CATAGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 || | ||||||||||| || ||||| || || || || || ||||| || || || || Sbjct 5666 CACCGCGATCTCAAGTCCCTCAATCTCCTGCTGGACTCCAAGTGGAACGTCAAGGTTCGT 5607 Query 878243 GA 878244 || Sbjct 5606 GA 5605 >seq20910 Length=12578 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || || | | || || ||||| ||| | ||||| || ||| | ||||| Sbjct 7604 AAGATGGCCTACCAGACGGCCAAGGGCATGCACTTCCTCCACTCGTCGGGCGTCGTCCAC 7663 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | ||||||||||| | || || || || || ||||| ||||| || || ||||| || Sbjct 7664 CGCGATCTCAAGTCCATGAACCTCCTCCTCGACTCTAAGTGGAACGTCAAGGTGAGCGAC 7723 Query 878246 TTTGGTTTGACAAAGTT 878262 |||||| |||| ||||| Sbjct 7724 TTTGGTCTGACCAAGTT 7740 >seq21899 Length=10926 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || || || || || | | ||| || || ||||| || || || || ||||| || Sbjct 1968 TTGTAGTCCGCGAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGC 1909 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || || || || |||||||| ||||||||||| |||||| || || || || Sbjct 1908 TGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTTGACATTCTCGATGGTGTCG 1849 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || || ||||| || || ||||| ||||| ||||| ||||| || || Sbjct 1848 GACGACTCAA-CCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTG 1793 >seq20369 Length=2600 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| || || | | || || || ||||| || || || || ||||| || Sbjct 1791 TTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGC 1850 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || || || || |||||||| ||||||||||| |||||| || || || || Sbjct 1851 TGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTTGACATTCTCGATGGTGTCG 1910 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| || || ||||||||||| ||||| ||||| || || Sbjct 1911 GACGACTCGA-CCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTCACGAAGATCTG 1966 >seq17696 Length=2611 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| || || | | || || || ||||| || || || || ||||| || Sbjct 810 TTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGC 751 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || || || || |||||||| ||||||||||| |||||| || || || || Sbjct 750 TGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTTGACATTCTCGATGGTGTCG 691 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| || || ||||||||||| ||||| ||||| || || Sbjct 690 GACGACTCGA-CCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTCACGAAGATCTG 635 >seq25831 Length=9499 Score = 86.0 bits (94), Expect = 4e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 878150 GGAATGCATTTCTTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTCTTAATCTA 878209 || ||||| ||| ||||||| |||||||| || ||| | ||||||||||| || || || Sbjct 2362 GGCATGCACTTCCTACACTCGTCCGGCATCGTGCATCGCGATCTCAAGTCGCTCAACCTG 2303 Query 878210 CTACTAGATTCTAAATGGAATGTTAAAGTGAGTGATTTTGGTTTGAC 878256 || || || || || ||||| | || ||||| || ||||| ||||| Sbjct 2302 CTGCTCGACTCCAAGTGGAACCTCAAGGTGAGCGACTTTGGATTGAC 2256 >seq23033 Length=9264 Score = 86.0 bits (94), Expect = 4e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 878150 GGAATGCATTTCTTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTCTTAATCTA 878209 || ||||| ||| ||||||| |||||||| || ||| | ||||||||||| || || || Sbjct 3955 GGCATGCACTTCCTACACTCGTCCGGCATCGTGCATCGCGATCTCAAGTCGCTCAACCTG 3896 Query 878210 CTACTAGATTCTAAATGGAATGTTAAAGTGAGTGATTTTGGTTTGAC 878256 || || || || || ||||| | || ||||| || ||||| ||||| Sbjct 3895 CTGCTCGACTCCAAGTGGAACCTCAAGGTGAGCGACTTTGGATTGAC 3849 >seq21898 Length=9279 Score = 86.0 bits (94), Expect = 4e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 878150 GGAATGCATTTCTTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTCTTAATCTA 878209 || ||||| ||| ||||||| |||||||| || ||| | ||||||||||| || || || Sbjct 5310 GGCATGCACTTCCTACACTCGTCCGGCATCGTGCATCGCGATCTCAAGTCGCTCAACCTG 5369 Query 878210 CTACTAGATTCTAAATGGAATGTTAAAGTGAGTGATTTTGGTTTGAC 878256 || || || || || ||||| | || ||||| || ||||| ||||| Sbjct 5370 CTGCTCGACTCCAAGTGGAACCTCAAGGTGAGCGACTTTGGATTGAC 5416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267055869615824