Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq20556 111 2e-19 seq20316 111 2e-19 seq18771 111 2e-19 seq18770 111 2e-19 >seq20556 Length=15276 Score = 111 bits (122), Expect = 2e-19 Identities = 289/437 (66%), Gaps = 8/437 (2%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 ||||||||| |||| || || ||| ||| || |||| | |||| |||| || Sbjct 14776 TACTTTGGTTTCAAGACGCTCGAGCGCTCCTACCTGTTCAAGG--TCGACGGCAAGATCG 14719 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| ||||| |||||| | ||| ||| |||| Sbjct 14718 TCGAGCGACCCCAGCACATGCTCATGCGCGTCGCCATCGGCCTGCACAAGGACAACATCC 14659 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| | | || || | |||| ||||| || || | Sbjct 14658 CCGCGGTGATCGAGACCTACGACCTGCTCTCGCAGCAGCTCTTCACCCACGCCACCCCGA 14599 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 |||| ||||| || || || || | |||||| |||| |||||||| | | | | Sbjct 14598 CCCTGTTCAACGCCGGCACTCCGCGCCCGCAGCTGTCGTCGTGCTTCCTCCTGACGATGA 14539 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||||| || || | | |||| || | ||||| |||| Sbjct 14538 AGGAGGACTCGATCGAGGGCATCTATGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGT 14479 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCG 75501 ||| || || || || || ||| | | ||| | | ||||| ||||| Sbjct 14478 CGGCCGGCGGCATCGGTCTGGCTTGCCACCGCATCCGCGCC--TCCAACTCGTACATTCG 14421 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || || || | ||| | || || ||||| ||||| | |||| ||| || Sbjct 14420 CGGCACCAACGGCACCTCGAACGGTCTCATCCCCATGCTCCGCGTGTACAACGACACTGC 14361 Query 75562 GCGCTATGTAAATCAAG 75578 ||||||||| | |||| Sbjct 14360 GCGCTATGTCGACCAAG 14344 >seq20316 Length=17165 Score = 111 bits (122), Expect = 2e-19 Identities = 289/437 (66%), Gaps = 8/437 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 ||||||||| |||| || || ||| ||| || |||| | |||| |||| || Sbjct 5092 TACTTTGGTTTCAAGACGCTCGAGCGCTCCTACCTGTTCAAGG--TCGACGGCAAGATCG 5149 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| ||||| |||||| | ||| ||| |||| Sbjct 5150 TCGAGCGACCCCAGCACATGCTCATGCGCGTCGCCATCGGCCTGCACAAGGACAACATCC 5209 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| | | || || | |||| ||||| || || | Sbjct 5210 CCGCGGTGATCGAGACCTACGACCTGCTCTCGCAGCAGCTCTTCACCCACGCCACCCCGA 5269 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 |||| ||||| || || || || | |||||| |||| |||||||| | | | | Sbjct 5270 CCCTGTTCAACGCCGGCACTCCGCGCCCGCAGCTGTCGTCGTGCTTCCTCCTGACGATGA 5329 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||||| || || | | |||| || | ||||| |||| Sbjct 5330 AGGAGGACTCGATCGAGGGCATCTATGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGT 5389 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCG 75501 ||| || || || || || ||| | | ||| | | ||||| ||||| Sbjct 5390 CGGCCGGCGGCATCGGTCTGGCTTGCCACCGCATCCGCGCC--TCCAACTCGTACATTCG 5447 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || || || | ||| | || || ||||| ||||| | |||| ||| || Sbjct 5448 CGGCACCAACGGCACCTCGAACGGTCTCATCCCCATGCTCCGCGTGTACAACGACACTGC 5507 Query 75562 GCGCTATGTAAATCAAG 75578 ||||||||| | |||| Sbjct 5508 GCGCTATGTCGACCAAG 5524 >seq18771 Length=17162 Score = 111 bits (122), Expect = 2e-19 Identities = 289/437 (66%), Gaps = 8/437 (2%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 ||||||||| |||| || || ||| ||| || |||| | |||| |||| || Sbjct 12074 TACTTTGGTTTCAAGACGCTCGAGCGCTCCTACCTGTTCAAGG--TCGACGGCAAGATCG 12017 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| ||||| |||||| | ||| ||| |||| Sbjct 12016 TCGAGCGACCCCAGCACATGCTCATGCGCGTCGCCATCGGCCTGCACAAGGACAACATCC 11957 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| | | || || | |||| ||||| || || | Sbjct 11956 CCGCGGTGATCGAGACCTACGACCTGCTCTCGCAGCAGCTCTTCACCCACGCCACCCCGA 11897 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 |||| ||||| || || || || | |||||| |||| |||||||| | | | | Sbjct 11896 CCCTGTTCAACGCCGGCACTCCGCGCCCGCAGCTGTCGTCGTGCTTCCTCCTGACGATGA 11837 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||||| || || | | |||| || | ||||| |||| Sbjct 11836 AGGAGGACTCGATCGAGGGCATCTATGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGT 11777 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCG 75501 ||| || || || || || ||| | | ||| | | ||||| ||||| Sbjct 11776 CGGCCGGCGGCATCGGTCTGGCTTGCCACCGCATCCGCGCC--TCCAACTCGTACATTCG 11719 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || || || | ||| | || || ||||| ||||| | |||| ||| || Sbjct 11718 CGGCACCAACGGCACCTCGAACGGTCTCATCCCCATGCTCCGCGTGTACAACGACACTGC 11659 Query 75562 GCGCTATGTAAATCAAG 75578 ||||||||| | |||| Sbjct 11658 GCGCTATGTCGACCAAG 11642 >seq18770 Length=15255 Score = 111 bits (122), Expect = 2e-19 Identities = 289/437 (66%), Gaps = 8/437 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 ||||||||| |||| || || ||| ||| || |||| | |||| |||| || Sbjct 501 TACTTTGGTTTCAAGACGCTCGAGCGCTCCTACCTGTTCAAGG--TCGACGGCAAGATCG 558 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| ||||| |||||| | ||| ||| |||| Sbjct 559 TCGAGCGACCCCAGCACATGCTCATGCGCGTCGCCATCGGCCTGCACAAGGACAACATCC 618 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| | | || || | |||| ||||| || || | Sbjct 619 CCGCGGTGATCGAGACCTACGACCTGCTCTCGCAGCAGCTCTTCACCCACGCCACCCCGA 678 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 |||| ||||| || || || || | |||||| |||| |||||||| | | | | Sbjct 679 CCCTGTTCAACGCCGGCACTCCGCGCCCGCAGCTGTCGTCGTGCTTCCTCCTGACGATGA 738 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||||| || || | | |||| || | ||||| |||| Sbjct 739 AGGAGGACTCGATCGAGGGCATCTATGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGT 798 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCG 75501 ||| || || || || || ||| | | ||| | | ||||| ||||| Sbjct 799 CGGCCGGCGGCATCGGTCTGGCTTGCCACCGCATCCGCGCC--TCCAACTCGTACATTCG 856 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || || || | ||| | || || ||||| ||||| | |||| ||| || Sbjct 857 CGGCACCAACGGCACCTCGAACGGTCTCATCCCCATGCTCCGCGTGTACAACGACACTGC 916 Query 75562 GCGCTATGTAAATCAAG 75578 ||||||||| | |||| Sbjct 917 GCGCTATGTCGACCAAG 933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596374312941440