Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq14518 127 6e-24 seq25728 95.1 4e-14 >seq14518 Length=74970 Score = 127 bits (140), Expect = 6e-24 Identities = 186/260 (72%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || ||||| ||||| || | ||| | |||||||||||||| |||||||| | ||| Sbjct 15314 GTCTTCACAGCCGTATCGATCAAACCCTCGCGACCACCCATAGCGTGGAAGAAAAACTCC 15373 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AA 302736 | ||| || || | || | ||| |||| ||||||||||| | |||||| || || Sbjct 15374 TGCGGAGTGAGACCACGAAGGTACGAGTTCTCGACGAAACCACGAGACTCGGGACCGAAA 15433 Query 302737 TCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTT 302796 ||||| |||| ||||| ||||| || | || | ||| | | || |||||||| Sbjct 15434 TCGTC---CTTGACGAAGTGCGGCAGCGTTCGGTCCCTGAAGCAGAAGGGAATACGCTTG 15490 Query 302797 CCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCC 302856 || || ||||||||||| |||| ||| | | || |||||| || || | | ||| Sbjct 15491 CCCTCGACGTTCTGCTGACCCACGCAGGCGAGCACCTGCGAGATGTTGATGGCCGAACCC 15550 Query 302857 TTGGAGCCAGCATTTACCAT 302876 ||||| |||||| | ||||| Sbjct 15551 TTGGAACCAGCAATCACCAT 15570 >seq25728 Length=6319 Score = 95.1 bits (104), Expect = 4e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||| ||| || ||||| |||||||||| |||||||||||| | | || | Sbjct 4778 CGATGGTCATTCGAGAAGGGATAGCGTGGGGATTGACGATGATGTCGGGGGTGATGCCTT 4719 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTGTCCG 251961 | |||||||||| |||| || || || ||| | || | || ||||||||||| Sbjct 4718 CGATGTTGAAGGGCATGTCCTCTT-GTCGGTACATGATGCCCACCGTGCCCTTTTGTCCA 4660 Query 251962 TGACGAGAACTGAACTTATCACCAAT 251987 ||||| ||||||||||| || ||||| Sbjct 4659 TGACGCGAACTGAACTTGTCGCCAAT 4634 Score = 91.5 bits (100), Expect = 4e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGAT 251484 ||||| || || | || ||||| || ||| || || || | ||| ||| ||| Sbjct 5392 CACACGTGCACTCGATAGGCATCGGACTGGTCGTAGAGTCGCTCTTTGAGGAACTGAGCC 5333 Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| || ||||| ||||||||||||||||| ||||| | |||||| |||||||| Sbjct 5332 GCACCGTGAGAGATCATGCAATCACGCTCCATTTCTCCGAATCTAAGACCTCCATCGCGT 5273 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | | ||||| | || || | |||||| | || |||||| | ||| || Sbjct 5272 GATCGGCCCTCCACCGGTTGTCTGGTGAGAATCTGCACGGGACCGCGAGCACGGGAGTGG 5213 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 ||||| | ||||| ||||| | | ||||||| | | || || || |||| Sbjct 5212 ATTTTATCGTCCACCATGTGCTTCAACCTCTGGTAGTAGGTTGGCCCTATAAAGA 5158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471323755521356