Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq17601 98.7 8e-16 seq23693 95.1 1e-14 seq15340 93.3 3e-14 seq25321 91.5 1e-13 seq24868 89.7 4e-13 seq21073 89.7 4e-13 seq25886 86.0 5e-12 seq25697 86.0 5e-12 seq22622 86.0 5e-12 seq21899 86.0 5e-12 seq18353 86.0 5e-12 seq25702 82.4 6e-11 >seq17601 Length=6497 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| |||| ||| || || Sbjct 5207 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTAGC 5266 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || |||||| | ||| ||| ||| Sbjct 5267 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAG 5326 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 5327 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 5386 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| ||| | ||| | ||| | | ||||| || || Sbjct 5387 ATCCAGAAGGAGTCCACGCTCCACCTCGTGCTTCGCTTGCGCGGTGG 5433 >seq23693 Length=4026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || ||||||||| |||| ||| | || Sbjct 3568 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACCATTACCCTCGAGGTCGAGTCGAGC 3509 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || |||||||| || || |||||| | || |||||| Sbjct 3508 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCTCCTGATCAG 3449 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||||| | || | || ||||||||| Sbjct 3448 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTCGCTGACTACAAC 3389 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 3388 ATCCAGAAGGAGTCCACCCTCCACCTCGTG 3359 >seq15340 Length=11482 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || ||||| || | || ||||| ||||| ||| |||| ||| | | Sbjct 903 AATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 844 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | || || || ||||| || || || ||| | || ||| || Sbjct 843 CGACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 784 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | ||||| | || ||||| ||||| ||||||| | || |||| |||||||| Sbjct 783 GCAGCGCCTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 724 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| ||| | ||| | ||| Sbjct 723 CATCCAGAAGGAGTCCACGCTCCACCTCGTG 693 >seq25321 Length=10237 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| || |||| ||| | || Sbjct 9908 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGAGC 9967 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || |||||||| || || || || | ||| ||| ||| Sbjct 9968 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 10027 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||||| | || |||| ||||||||| Sbjct 10028 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 10087 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 10088 ATCCAGAAGGAGTCGACCCTCCACCTCGTG 10117 >seq24868 Length=8702 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| | || ||||| ||||| ||| |||| ||| || || Sbjct 7272 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTAGC 7331 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || |||||| | || || ||| Sbjct 7332 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 7391 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||| | | || |||| ||||||||| Sbjct 7392 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTGGCCGACTACAAC 7451 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || || |||||||| ||| | ||| Sbjct 7452 ATCCAGAAGGAGTCCACGCTTCAC 7475 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| |||| ||| | Sbjct 6815 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCGTC 6874 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||||||| || || || ||| | || ||||| Sbjct 6875 CGACACCATCGAGAATGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCA 6934 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||||| ||||||| | || |||| |||||||| Sbjct 6935 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 6994 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| | ||| Sbjct 6995 CATCCAGAAGGAGTCGACCCTCCACCTCGTG 7025 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || ||||| || |||| ||| | || Sbjct 7044 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCGAGC 7103 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||||| || || || ||| | ||| ||| ||| Sbjct 7104 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 7163 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||||| | || | || ||||||||| Sbjct 7164 CAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTCGCTGACTACAAC 7223 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| | ||| | ||| Sbjct 7224 ATCCAGAAGGAGTCCACGCTCCACCTCGTG 7253 >seq21073 Length=984 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| | || ||||| ||||| ||| |||| ||| | || Sbjct 984 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC 925 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 924 GATACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 865 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 864 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTGGCCGACTACAAC 805 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 804 ATCCAGAAGGAGTCGAC 788 >seq25886 Length=15935 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 |||||||| ||||| |||||||| ||||| | || |||||||||| | ||| |||| | Sbjct 5584 CACGGCTTCCACGTCCACGAGTTTGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGG 5643 Query 105147 CACTTCAACCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGGC 105206 ||||||||||| || | || ||||| | || || | || || | || |||||| Sbjct 5644 CACTTCAACCCCTTTGGCAAGAAGCACGGTGGACCCGATGACGAGGAGCGCCATGTCGGC 5703 Query 105207 GACCTGGGCAATGTC 105221 || || ||||| ||| Sbjct 5704 GATCTCGGCAACGTC 5718 >seq25697 Length=27391 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| ||| |||| ||| | | Sbjct 14995 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 15054 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 15055 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 15114 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||||| | || | || ||||||||| Sbjct 15115 CAGCGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCGCCGACTACAAC 15174 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||||||||| Sbjct 15175 ATCCAGAAGGAGTCTAC 15191 >seq22622 Length=4454 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| |||| ||| || | Sbjct 613 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTAG 672 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || ||||| || || || ||| | || ||||| Sbjct 673 CGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 732 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||| ||||||| | || | || |||||||| Sbjct 733 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 792 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| || |||||||| ||| | ||| Sbjct 793 CATCCAGAAGGAGTCAACGCTCCAC 817 >seq21899 Length=10926 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || ||||| ||| |||| ||| | | Sbjct 1790 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTTGAGTCGTCC 1849 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||||||| || || || || | ||| ||||||| Sbjct 1850 GACACCATCGAGAATGTCAAGCAAAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAG 1909 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||| | | || | |||||||||||| Sbjct 1910 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTCGCGGACTACAAC 1969 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 1970 ATCCAGAAGGAGTCCAC 1986 >seq18353 Length=6497 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || | || || || |||||||| |||| ||| ||| | Sbjct 1063 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACTCTCGAGGTCGAGAGCTCG 1004 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || |||||||| || || || ||| | ||| ||| || Sbjct 1003 -GACACGATCGAGAACGTTAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 945 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||||| ||||||| | || |||| |||||||| Sbjct 944 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 885 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| | ||| Sbjct 884 CATCCAGAAGGAGTCGACCCTCCACCTCGTG 854 >seq25702 Length=8093 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||||||| |||| ||| | | Sbjct 3125 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTCGAGTCGAG 3066 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || |||||||| || || || || | ||| ||| || Sbjct 3065 CGACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 3006 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || | || |||||||| Sbjct 3005 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGACTACAA 2946 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 2945 CATCCAGAAGGAGTCGAC 2928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398749491987532