Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq21899 100 2e-16 seq25702 95.1 9e-15 seq17601 89.7 4e-13 seq20369 87.8 1e-12 seq17696 87.8 1e-12 seq25321 82.4 6e-11 >seq21899 Length=10926 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||| || || || ||||| || ||||| | ||||| ||| || || || Sbjct 1992 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCATCCTCCAGCTGC 1933 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| || | |||| | ||||||||||| || |||||||| ||||| || | ||| Sbjct 1932 TTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTT 1873 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || |||||| | || | ||||| || || || || || || || || || || || Sbjct 1872 TGCTTGACATTCTCGATGGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTACCCGTG 1813 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| || || || |||||||| Sbjct 1812 AGGGTCTTGACGAAGATCTGCAT 1790 >seq25702 Length=8093 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || |||||||| || || || ||||| || || || Sbjct 2119 CCGCCGCGCAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCG 2178 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| || ||||| || ||||| || | |||| | ||||| ||||| ||| Sbjct 2179 AGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 2238 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | ||||| || || | || | ||||| || || Sbjct 2239 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTCGACTCGACC 2298 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || || | || || || || |||||||| Sbjct 2299 TCGAGAGTGATGGTCTTACCCGTGAGCGTCTTGACGAAGATCTGCAT 2345 >seq17601 Length=6497 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || || || || | || || || || || || || ||||| || ||||| Sbjct 5661 CCTCCACGCAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCG 5602 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || || ||||| | || | | ||||| ||||| ||| Sbjct 5601 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGA 5542 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || || || | || | ||||| || || || Sbjct 5541 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACC 5482 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || | || || || || |||||||| Sbjct 5481 TCAAGAGTAATGGTCTTACCCGTGAGCGTCTTGACGAAGATCTGCAT 5435 >seq20369 Length=2600 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 || || ||||| || || || | ||| || || ||||| || ||||| || | ||| Sbjct 1782 TTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 1841 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718 | | ||||||||||| || |||||||| ||||| || | ||||| |||||| | || Sbjct 1842 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTTGACATTCTCG 1901 Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAAT 29778 | ||||| || || || || || || || || || || || | ||| || || || Sbjct 1902 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTCACGAAG 1961 Query 29779 ATCTGCAT 29786 |||||||| Sbjct 1962 ATCTGCAT 1969 >seq17696 Length=2611 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 || || ||||| || || || | ||| || || ||||| || ||||| || | ||| Sbjct 819 TTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 760 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718 | | ||||||||||| || |||||||| ||||| || | ||||| |||||| | || Sbjct 759 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTTGACATTCTCG 700 Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAAT 29778 | ||||| || || || || || || || || || || || | ||| || || || Sbjct 699 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTCACGAAG 640 Query 29779 ATCTGCAT 29786 |||||||| Sbjct 639 ATCTGCAT 632 >seq25321 Length=10237 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || || || || || || ||||| || || || | |||||| Sbjct 10122 CGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 10063 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || ||||| | || | | ||||| ||||| ||||||||||| ||| Sbjct 10062 TCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTG 10003 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||||| || || | || | || || || || || ||||| || Sbjct 10002 TCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGAGTGATG 9943 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 9942 GTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 9908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385096251032508