Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq24868 95.1 1e-14 seq25321 86.0 6e-12 seq23693 86.0 6e-12 seq22622 86.0 6e-12 >seq24868 Length=8702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || |||| ||| ||||| || |||||| Sbjct 7012 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 6953 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| |||||||||||||| ||||| || ||||| ||| ||||| || Sbjct 6952 GCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTG 6893 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | || || || | || | |||||||| || | || Sbjct 6892 ACATTCTCGATGGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 6833 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 6832 TTCACGAAGATCTGCAT 6816 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||| || || | || ||||| || Sbjct 7474 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCATCCTCGAGCTGC 7415 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || ||||| |||| ||||| ||||| |||||||| |||||||| ||||| || || Sbjct 7414 TTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTC 7355 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || || | | || | |||||| | | || || || | || | |||||||||||| Sbjct 7354 TGCTTCACGTTCTCGATCGTGTCGCTAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 7295 Query 137389 AATGTTTTTACGAATATTTGCATA 137412 | || || ||||| || |||||| Sbjct 7294 AGAGTCTTGACGAAGATCTGCATA 7271 >seq25321 Length=10237 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||| || || | ||| ||||| || Sbjct 9882 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGGCCGTCCTCGAGCTGC 9823 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || ||||| |||||||||| |||||||||||||| || || || ||||| || || Sbjct 9822 TTGCCAGCGAAGATCAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGGATCTTC 9763 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || || | | || | |||||| | | || || || | || | |||||||| || Sbjct 9762 TGCTTCACATTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTG 9703 Query 137389 AATGTTTTTACGAATATTTGCATAG 137413 | || || ||||| || ||||||| Sbjct 9702 AGGGTCTTCACGAAGATCTGCATAG 9678 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || |||| ||| ||||| || |||||| Sbjct 10104 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 10045 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| ||||| || || || || || || ||||| || ||||| || Sbjct 10044 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTC 9985 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || || | | || || || | ||| | ||||||||||||| || Sbjct 9984 ACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGAGTGATGGTCTTGCCGGTCAGGGTC 9925 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 9924 TTGACGAAGATCTGCATA 9907 >seq23693 Length=4026 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| | |||| ||| ||||| || || ||| Sbjct 3144 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCA 3203 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| || || |||||||||||||| ||||| || ||||| || || || || Sbjct 3204 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 3263 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| ||| || || || | || | ||||||||||||| || Sbjct 3264 ACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 3323 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 3324 TTGACGAAGATCTGCAT 3340 >seq22622 Length=4454 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| | |||| ||| ||||| || || ||| Sbjct 810 GTTGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 751 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || || |||||||||||||| ||||| || ||||| || || || || Sbjct 750 GCAAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 691 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || || | || | ||||||||||| | || Sbjct 690 ACGTTCTCGATCGTGTCGCTAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 631 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 630 TTCACGAAGATCTGCAT 614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488384075121600