Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq18580 98.7 7e-16 seq25702 96.9 2e-15 seq21899 95.1 8e-15 seq17601 95.1 8e-15 seq22622 93.3 3e-14 seq25321 86.0 4e-12 seq20369 86.0 4e-12 seq17696 86.0 4e-12 seq24868 84.2 1e-11 seq23693 84.2 1e-11 seq25697 82.4 5e-11 >seq18580 Length=2690 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/205 (72%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| || | || || ||||| || Sbjct 2613 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2554 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || | || | ||| || ||||| || ||||| |||| ||| Sbjct 2553 GATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CAT 2495 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||||| || || || || | ||||| || || || || | || || | Sbjct 2494 TCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 2435 Query 33737 CAAAGATCTGCATAGT-TGGTGTGT 33760 | |||||||||||||| |||||||| Sbjct 2434 CGAAGATCTGCATAGTCTGGTGTGT 2410 >seq25702 Length=8093 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || | ||| ||||| |||| || | || Sbjct 2143 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGC 2202 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || |||| ||||||||| || | || | ||| || ||||| || || Sbjct 2203 TTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTT 2262 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | |||||||| || || || || | ||||| || ||||| || Sbjct 2263 TGCTTCA-CGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGAGTGATGGTCTTACCCGT 2321 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 | ||| || || |||||||||||| Sbjct 2322 GAGCGTCTTGACGAAGATCTGCATA 2346 >seq21899 Length=10926 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || | ||| ||||| | || |||| || Sbjct 1992 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCATCCTCCAGCTGC 1933 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || |||| |||||||||||| | || | ||| || ||||| ||| || Sbjct 1932 TTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTT 1873 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || | ||| || | ||||||| || || || || | ||||| || ||||| || Sbjct 1872 TGCTTGA-CATTCTCGATGGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTACCCGT 1814 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 1813 GAGGGTCTTGACGAAGATCTGCAT 1790 >seq17601 Length=6497 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| || | ||| | || || ||| ||| || || |||||||| |||| Sbjct 5434 ACCACCGCGCAAGCGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 5375 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | || || ||||| || || | ||||||||| || | || Sbjct 5374 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 5315 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || ||||| |||| | | || | ||||||||| || || | Sbjct 5314 GATGCCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTAGACTCGA 5256 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || || ||||||||||| Sbjct 5255 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 5207 >seq22622 Length=4454 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | ||| | || || || ||| || || |||||||| |||| Sbjct 1069 ACCACCGCGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 1010 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | || || ||||| || |||| ||||||||| || | || Sbjct 1009 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGG 950 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || ||||| |||| | | || | |||||||| || || | Sbjct 949 GATGCCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTTTCGATCGTGTCGCTGGACTCGA 891 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || ||||| || | || || || |||||||||||| Sbjct 890 CCTCGAGAGTAATGGTCTTACCCGTAAGGGTCTTGACGAAGATCTGCATA 841 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| || || || |||| || | || Sbjct 1500 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 1441 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || |||| ||||||||| || | || | || || ||||| || ||| Sbjct 1440 TTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTC 1381 Query 33667 TGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | ||| ||| ||||| || || || || | |||||| || ||||| || Sbjct 1380 TGCTTCA-CGTTCTCAATGGTATCGCTCGACTCAACCTCGAGCGTGATGGTCTTACCGGT 1322 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 | || || || |||||||||||| Sbjct 1321 CAGAGTCTTGACGAAGATCTGCATA 1297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| || | || || || ||||| Sbjct 805 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 746 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||||| | || | || || ||||| || ||||| ||| || | Sbjct 745 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGT 687 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||||| || || || || | ||||| || || || || | || || | Sbjct 686 TCTCGATCGTGTCGCTAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA 627 Query 33737 CAAAGATCTGCATAGT-TGGTGTG 33759 | ||||||||||| || || |||| Sbjct 626 CGAAGATCTGCATTGTCTGTTGTG 603 >seq25321 Length=10237 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| || || || |||| || | || || || || || Sbjct 9871 CTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAA 9812 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| |||||||||||| | || | ||| || ||||| || ||||| ||| |||| Sbjct 9811 GATCAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC-ACAT 9753 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||| || || || || | ||||| || || || || | || || | Sbjct 9752 TCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 9693 Query 33737 CAAAGATCTGCATAGT 33752 | |||||||||||||| Sbjct 9692 CGAAGATCTGCATAGT 9677 >seq20369 Length=2600 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || | ||| || || |||| || | || || ||||| || ||| Sbjct 1782 TTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 1841 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | |||||||||||| | || | ||| || ||||| ||| || || || |||| || Sbjct 1842 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTT-GACATTCTC 1900 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | ||||||| || || || || | ||||| || ||||| || | || || || || Sbjct 1901 GATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTCACGAA 1960 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 1961 GATCTGCAT 1969 >seq17696 Length=2611 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || | ||| || || |||| || | || || ||||| || ||| Sbjct 819 TTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 760 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | |||||||||||| | || | ||| || ||||| ||| || || || | ||| || Sbjct 759 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTTGCTTGA-CATTCTC 701 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | ||||||| || || || || | ||||| || ||||| || | || || || || Sbjct 700 GATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTCACGAA 641 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 640 GATCTGCAT 632 >seq24868 Length=8702 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| | ||| | || || ||| ||| || || |||||||| || | Sbjct 7271 ACCGCCACGCAGACGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 7212 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| || | || || ||||| || || | |||||||| || | || Sbjct 7211 GAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGGGG 7152 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || || |||| | | || | |||||||| || || | Sbjct 7151 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATCGTGTCGCTCGACTCGA 7093 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || ||||| || | || || || |||||||||||| Sbjct 7092 CCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATA 7043 >seq23693 Length=4026 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| || | || || || || || Sbjct 3149 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 3208 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||||| | || | || || ||||| || ||||| ||| || | Sbjct 3209 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGT 3267 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||||||| || || || || | ||||| || || || || | || || | Sbjct 3268 TCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGA 3327 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 3328 CGAAGATCTGCAT 3340 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| || | ||| || || |||| || | || Sbjct 3594 TGGAGAGTCGACTCCTTATGGATGTTGTAGTCCGCGAGGGTACGGCCGTCCTCGAGCTGC 3653 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||| || | || | || || ||||| || ||| Sbjct 3654 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 3713 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | ||||||| || || || || | |||||| || || || || Sbjct 3714 TGCTTCA-CGTTCTCGATGGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGT 3772 Query 33726 TAACGTTTTTACAAAGATCTGCATAGT-TGGTGTGTTTATCGCGC 33769 | || || || ||||||||||| || || ||||| | | |||| Sbjct 3773 GAGGGTCTTCACGAAGATCTGCATTGTCTGTTGTGTGTGTAGCGC 3817 >seq25697 Length=27391 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| || || || |||| || | || || || || || Sbjct 14958 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCGAA 14899 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | ||| || ||||| || || || || | | | Sbjct 14898 GATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTTTGCTTGA-CGT 14840 Query 33678 AGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| ||||||||| || || || || | ||||| || ||||| || | ||| || | Sbjct 14839 TCTCAATGGTGTCGCTCGACTCGACCTCGAGAGTGATGGTCTTACCCGTGAGCGTCTTCA 14780 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 14779 CGAAGATCTGCATA 14766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328599088776960