Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq25757 86.0 3e-12 >seq25757 Length=563726 Score = 86.0 bits (94), Expect = 3e-12 Identities = 91/118 (77%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 4454 CAGTCCGACTTCCTACTCGCCTTCACCTGGGGTGAGTCGGAAGACAAGCCGGCCGACGGC 4513 ||| | |||| ||| || |||||||||||| | ||| ||| | | ||| || |||||| Sbjct 292027 CAGGCGGACTACCTGCTGGCCTTCACCTGGAGCGAGACGGC-GTC--GCCCGCTGACGGC 291971 Query 4514 GGCACCATGGACACCTGGAACAAGTGCCGAGGCATCAAGAGCCACGTCCCACTCCACA 4571 ||||| | ||||| |||||||||||| | |||| |||| |||||| | ||||||| Sbjct 291970 GGCACGCTCGACACGTGGAACAAGTGCAGGGGCACCAAGGTGCACGTCTCCCTCCACA 291913 Score = 82.4 bits (90), Expect = 4e-11 Identities = 94/124 (76%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 4448 GCTCAACAGTCCGACTTCCTACTCGCCTTCACCTGGGGTGAGTCGGAAGACAAGCCGGCC 4507 || || ||| | |||| || || |||||||||||| ||||| ||| | | || || Sbjct 271197 GCCCACCAGGCAGACTACCCGCTGGCCTTCACCTGGAGTGAGACGGC-GTCT--CCCGCT 271141 Query 4508 GACGGCGGCACCATGGACACCTGGAACAAGTGCCGAGGCATCAAGAGCCACGTCCCACTC 4567 |||||||| || | ||||| |||||||||||| |||||| |||| |||||| | ||| Sbjct 271140 GACGGCGGAACGCTCGACACATGGAACAAGTGCAGAGGCACCAAGGTGCACGTCTCCCTC 271081 Query 4568 CACA 4571 |||| Sbjct 271080 CACA 271077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236567671477268