Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq25321 113 4e-20 seq25697 109 5e-19 seq15340 109 5e-19 seq17601 104 2e-17 seq18353 98.7 8e-16 seq22622 96.9 3e-15 seq21073 96.9 3e-15 seq24868 95.1 1e-14 seq23693 89.7 4e-13 >seq25321 Length=10237 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| || | || | || | || || || || || || ||||||||| Sbjct 10136 TGCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 10077 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| |||||||| ||||| ||| | ||||||||||| || ||||| | Sbjct 10076 CCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGG 10017 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || |||||| | |||| | | || | || || | | || | Sbjct 10016 GAATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTCGACTCGA 9957 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || ||||| || | ||||| ||||| || || || ||||| |||||| Sbjct 9956 CCTCGAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATA 9907 >seq25697 Length=27391 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| | |||| ||||||||||||| || ||| Sbjct 14735 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCGTCTTCGAGCTGCTTGCCG 14676 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | ||||| ||||| |||||| | ||| Sbjct 14675 GCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTATCCTGGATCTTCTGCTTC 14616 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || || || Sbjct 14615 ACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 14556 Query 27231 TTCACAAAGATTTGCATAGCTGCTA 27255 ||||| ||||| ||||| |||||| Sbjct 14555 TTCACGAAGATCTGCATGTCTGCTA 14531 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| || | || | || | || || || || || || ||||||||| Sbjct 14995 TGCCGCCGCGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 14936 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | || |||| |||||||| ||||| ||| | ||||||||||| || ||||| | Sbjct 14935 CCAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGG 14876 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || |||||| | || | | | || | ||||| | | || | Sbjct 14875 GGATACCCTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCAATGGTGTCGCTCGACTCGA 14816 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || ||||| || | || ||||| || || ||||| ||||| |||||| Sbjct 14815 CCTCGAGAGTGATGGTCTTACCCGTGAGCGTCTTCACGAAGATCTGCATA 14766 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||||| || | || | || | ||||| || || || || ||||||||| Sbjct 15222 GCCACCGCGCAGACGAAGGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGC 15163 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| |||| || ||||| ||||| ||| | ||||||||||| || ||||| || Sbjct 15162 GAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGG 15103 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| | |||| | | || | ||||| | | || || Sbjct 15102 AATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGGACGACTCGAC 15043 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || || || || ||||| ||||| Sbjct 15042 CTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 14995 >seq15340 Length=11482 Score = 109 bits (120), Expect = 5e-19 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | || | || | || || || || || || ||||||||| | Sbjct 220 CCGCCGCGCAGGCGGAGSACGAGGTGGAGSGTSGACTCCTTCTGGATGTTGTAGTCGGCC 279 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| |||||||| || |||||| | ||||||||||| || || || || Sbjct 280 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 339 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| | |||| | | || | ||||| | | || ||| Sbjct 340 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGGACGACTCGACT 399 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| ||||| || || |||||||| ||||| Sbjct 400 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 446 >seq17601 Length=6497 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || |||||||| || | || | || | ||| || || || || || ||||||||| | Sbjct 5433 CCACCGCGCAAGCGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 5374 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| |||||||| || |||||| | ||||||||||| || ||||| || Sbjct 5373 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 5314 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| | |||| | | || | ||||| | | || || Sbjct 5313 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTAGACTCGACC 5254 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || || ||||| ||||| ||||| Sbjct 5253 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 5207 >seq18353 Length=6497 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| |||||||| ||||| Sbjct 1095 GTCGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACCGTCCTCGAGCTGCTTACCA 1154 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | |||||| || || |||||| | ||| Sbjct 1155 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC 1214 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || || || Sbjct 1215 ACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 1274 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 1275 TTCACGAAGATCTGCAT 1291 >seq22622 Length=4454 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| |||||||| || ||| Sbjct 1266 GTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1207 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | ||| Sbjct 1206 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 1147 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || ||||| || | || ||||| || || Sbjct 1146 ACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGAGTAATGGTCTTACCCGTGAGCGTC 1087 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 1086 TTGACGAAGATCTGCATA 1069 >seq21073 Length=984 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||||| || | || | || | || || || || || || ||||||||| Sbjct 757 GCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 816 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | || |||| |||||||| || |||||| | ||||||||||| || ||||| || Sbjct 817 CAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 876 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| | |||| | | || | || || | | || || Sbjct 877 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTATCGCTCGACTCGAC 936 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| |||||||| || || ||||| ||||| Sbjct 937 CTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 984 >seq24868 Length=8702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| |||| |||||||| ||||| Sbjct 7012 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 6953 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | ||||| || || ||||| | || Sbjct 6952 GCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTG 6893 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | ||||| || || || || | ||||| || || || Sbjct 6892 ACATTCTCGATGGTGTCGGACGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 6833 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 6832 TTCACGAAGATCTGCAT 6816 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||||| || | || | || | ||| || || || || || ||||||||| Sbjct 7499 GCCGCCGCGCAGACGGAGGACGAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 7440 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | | || | || |||||||| || || ||| | ||||||||||| || || || || Sbjct 7439 CAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGG 7380 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || |||||| | |||| | | || | ||||| | | || || Sbjct 7379 GATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTAGACTCGAC 7320 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||||| |||||||| || || ||||| |||||| Sbjct 7319 CTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATA 7271 >seq23693 Length=4026 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | | || |||| |||||||| || ||| Sbjct 3600 GTCGACTCCTTATGGATGTTGTAGTCCGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 3659 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | ||| Sbjct 3660 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 3719 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || || || Sbjct 3720 ACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTC 3779 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 3780 TTCACGAAGATCTGCAT 3796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424798775281056