Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq25559 127 6e-24 seq20556 84.2 7e-11 seq20316 84.2 7e-11 seq18771 84.2 7e-11 seq18770 84.2 7e-11 >seq25559 Length=72922 Score = 127 bits (140), Expect = 6e-24 Identities = 135/177 (76%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||| | |||||| || |||| || |||| ||||| || | || || |||||||| Sbjct 47571 CTTTGCCGAGCGTCTCGTCGGGTTCGCTGCCGTCGAGGGCATCTTCTTCTCGGGCAGCTT 47630 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || |||||||||||| | || ||||| || || |||| ||| ||| |||| ||||||| Sbjct 47631 CTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCTTCAGTAACG 47689 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || ||||||| || |||||||| | || |||||||| || || || |||||||||| Sbjct 47690 AAATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCGTGCCTCCTCTACACCA 47746 >seq20556 Length=15276 Score = 84.2 bits (92), Expect = 7e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| || | ||||| || ||||| ||||| |||||||||||||| ||||||||||| Sbjct 12967 CACTTCTATGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTCCGCACCCGACCG 12908 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || | ||||| ||||| || Sbjct 12907 GCTGCCAACGCCATCCAGTTCACTGT 12882 >seq20316 Length=17165 Score = 84.2 bits (92), Expect = 7e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| || | ||||| || ||||| ||||| |||||||||||||| ||||||||||| Sbjct 6901 CACTTCTATGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTCCGCACCCGACCG 6960 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || | ||||| ||||| || Sbjct 6961 GCTGCCAACGCCATCCAGTTCACTGT 6986 >seq18771 Length=17162 Score = 84.2 bits (92), Expect = 7e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| || | ||||| || ||||| ||||| |||||||||||||| ||||||||||| Sbjct 10265 CACTTCTATGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTCCGCACCCGACCG 10206 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || | ||||| ||||| || Sbjct 10205 GCTGCCAACGCCATCCAGTTCACTGT 10180 >seq18770 Length=15255 Score = 84.2 bits (92), Expect = 7e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| || | ||||| || ||||| ||||| |||||||||||||| ||||||||||| Sbjct 2310 CACTTCTATGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTCCGCACCCGACCG 2369 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || | ||||| ||||| || Sbjct 2370 GCTGCCAACGCCATCCAGTTCACTGT 2395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587803059665660