Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq20556 111 2e-19 seq20316 111 2e-19 seq18771 111 2e-19 seq18770 111 2e-19 >seq20556 Length=15276 Score = 111 bits (122), Expect = 2e-19 Identities = 289/437 (66%), Gaps = 8/437 (2%) Strand=Plus/Plus Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||| | ||||||||||| ||| |||| | ||||| ||||| || || | ||| | | Sbjct 14344 CTTGGTCGACATAGCGCGCAGTGTCGTTGTACACGCGGAGCATGGGGATGAGACCGTTCG 14403 Query 111777 ATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 111834 | || || || || ||||| ||||| | | ||| | | ||| || Sbjct 14404 AGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCGGATGCGGTGGCAAGCCAG 14461 Query 111835 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 111894 || || || || ||| |||| ||||| | || |||| | | || || ||||||| || Sbjct 14462 ACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCATAGATGCC 14521 Query 111895 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 111954 | ||| ||||||||||| | | | |||||||| |||| |||||| | || || Sbjct 14522 CTCGATCGAGTCCTCCTTCATCGTCAGGAGGAAGCACGACGACAGCTGCGGGCGCGGAGT 14581 Query 111955 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTA 112014 || || ||||| ||||| || || ||||| |||| | || || | | |||||| Sbjct 14582 GCCGGCGTTGAACAGGGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGAGAGCAGGTCGTA 14641 Query 112015 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 ||||| | || | |||| ||| ||| | |||||| ||||| ||||||| ||| Sbjct 14642 GGTCTCGATCACCGCGGGGATGTTGTCCTTGTGCAGGCCGATGGCGACGCGCATGAGCAT 14701 Query 112075 GTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGCTCTTCTCAAGG 112132 || ||| || || | || |||| |||| | |||| || ||| ||| || Sbjct 14702 GTGCTGGGGTCGCTCGACGATCTTGCCGTCGA--CCTTGAACAGGTAGGAGCGCTCGAGC 14759 Query 112133 GTTTTGAGACCAAAGTA 112149 || |||| ||||||||| Sbjct 14760 GTCTTGAAACCAAAGTA 14776 >seq20316 Length=17165 Score = 111 bits (122), Expect = 2e-19 Identities = 289/437 (66%), Gaps = 8/437 (2%) Strand=Plus/Minus Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||| | ||||||||||| ||| |||| | ||||| ||||| || || | ||| | | Sbjct 5524 CTTGGTCGACATAGCGCGCAGTGTCGTTGTACACGCGGAGCATGGGGATGAGACCGTTCG 5465 Query 111777 ATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 111834 | || || || || ||||| ||||| | | ||| | | ||| || Sbjct 5464 AGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCGGATGCGGTGGCAAGCCAG 5407 Query 111835 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 111894 || || || || ||| |||| ||||| | || |||| | | || || ||||||| || Sbjct 5406 ACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCATAGATGCC 5347 Query 111895 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 111954 | ||| ||||||||||| | | | |||||||| |||| |||||| | || || Sbjct 5346 CTCGATCGAGTCCTCCTTCATCGTCAGGAGGAAGCACGACGACAGCTGCGGGCGCGGAGT 5287 Query 111955 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTA 112014 || || ||||| ||||| || || ||||| |||| | || || | | |||||| Sbjct 5286 GCCGGCGTTGAACAGGGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGAGAGCAGGTCGTA 5227 Query 112015 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 ||||| | || | |||| ||| ||| | |||||| ||||| ||||||| ||| Sbjct 5226 GGTCTCGATCACCGCGGGGATGTTGTCCTTGTGCAGGCCGATGGCGACGCGCATGAGCAT 5167 Query 112075 GTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGCTCTTCTCAAGG 112132 || ||| || || | || |||| |||| | |||| || ||| ||| || Sbjct 5166 GTGCTGGGGTCGCTCGACGATCTTGCCGTCGA--CCTTGAACAGGTAGGAGCGCTCGAGC 5109 Query 112133 GTTTTGAGACCAAAGTA 112149 || |||| ||||||||| Sbjct 5108 GTCTTGAAACCAAAGTA 5092 >seq18771 Length=17162 Score = 111 bits (122), Expect = 2e-19 Identities = 289/437 (66%), Gaps = 8/437 (2%) Strand=Plus/Plus Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||| | ||||||||||| ||| |||| | ||||| ||||| || || | ||| | | Sbjct 11642 CTTGGTCGACATAGCGCGCAGTGTCGTTGTACACGCGGAGCATGGGGATGAGACCGTTCG 11701 Query 111777 ATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 111834 | || || || || ||||| ||||| | | ||| | | ||| || Sbjct 11702 AGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCGGATGCGGTGGCAAGCCAG 11759 Query 111835 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 111894 || || || || ||| |||| ||||| | || |||| | | || || ||||||| || Sbjct 11760 ACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCATAGATGCC 11819 Query 111895 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 111954 | ||| ||||||||||| | | | |||||||| |||| |||||| | || || Sbjct 11820 CTCGATCGAGTCCTCCTTCATCGTCAGGAGGAAGCACGACGACAGCTGCGGGCGCGGAGT 11879 Query 111955 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTA 112014 || || ||||| ||||| || || ||||| |||| | || || | | |||||| Sbjct 11880 GCCGGCGTTGAACAGGGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGAGAGCAGGTCGTA 11939 Query 112015 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 ||||| | || | |||| ||| ||| | |||||| ||||| ||||||| ||| Sbjct 11940 GGTCTCGATCACCGCGGGGATGTTGTCCTTGTGCAGGCCGATGGCGACGCGCATGAGCAT 11999 Query 112075 GTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGCTCTTCTCAAGG 112132 || ||| || || | || |||| |||| | |||| || ||| ||| || Sbjct 12000 GTGCTGGGGTCGCTCGACGATCTTGCCGTCGA--CCTTGAACAGGTAGGAGCGCTCGAGC 12057 Query 112133 GTTTTGAGACCAAAGTA 112149 || |||| ||||||||| Sbjct 12058 GTCTTGAAACCAAAGTA 12074 >seq18770 Length=15255 Score = 111 bits (122), Expect = 2e-19 Identities = 289/437 (66%), Gaps = 8/437 (2%) Strand=Plus/Minus Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||| | ||||||||||| ||| |||| | ||||| ||||| || || | ||| | | Sbjct 933 CTTGGTCGACATAGCGCGCAGTGTCGTTGTACACGCGGAGCATGGGGATGAGACCGTTCG 874 Query 111777 ATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 111834 | || || || || ||||| ||||| | | ||| | | ||| || Sbjct 873 AGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCGGATGCGGTGGCAAGCCAG 816 Query 111835 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 111894 || || || || ||| |||| ||||| | || |||| | | || || ||||||| || Sbjct 815 ACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCATAGATGCC 756 Query 111895 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 111954 | ||| ||||||||||| | | | |||||||| |||| |||||| | || || Sbjct 755 CTCGATCGAGTCCTCCTTCATCGTCAGGAGGAAGCACGACGACAGCTGCGGGCGCGGAGT 696 Query 111955 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTA 112014 || || ||||| ||||| || || ||||| |||| | || || | | |||||| Sbjct 695 GCCGGCGTTGAACAGGGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGAGAGCAGGTCGTA 636 Query 112015 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 ||||| | || | |||| ||| ||| | |||||| ||||| ||||||| ||| Sbjct 635 GGTCTCGATCACCGCGGGGATGTTGTCCTTGTGCAGGCCGATGGCGACGCGCATGAGCAT 576 Query 112075 GTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGCTCTTCTCAAGG 112132 || ||| || || | || |||| |||| | |||| || ||| ||| || Sbjct 575 GTGCTGGGGTCGCTCGACGATCTTGCCGTCGA--CCTTGAACAGGTAGGAGCGCTCGAGC 518 Query 112133 GTTTTGAGACCAAAGTA 112149 || |||| ||||||||| Sbjct 517 GTCTTGAAACCAAAGTA 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627826413724800