Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq25697 111 5e-19 seq23693 105 2e-17 seq22622 89.7 2e-12 >seq25697 Length=27391 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | || || || |||||||||||||| || || || || || || Sbjct 14769 CATACCGCCGCGCAGACGGAGGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 14710 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||| || || || || || ||||| ||||| |||||||| || Sbjct 14709 AGCGAGCGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGG 14650 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || |||||||| || || || || || || || | || || | || Sbjct 14649 AGGGATGCCCTCCTTATCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGGACGACTC 14590 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || |||||||| Sbjct 14589 GACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 14539 Score = 107 bits (118), Expect = 6e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || |||||||||||||| || || || || || || | | || || || || Sbjct 15206 AGGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCC 15147 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || ||||| ||||| ||||| ||||| || || ||||| || || || ||| Sbjct 15146 TCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 15087 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || |||| || || | || || || || || | ||| Sbjct 15086 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTC 15027 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || || |||||||| Sbjct 15026 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 14995 >seq23693 Length=4026 Score = 105 bits (116), Expect = 2e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || || || || ||||| || || || || || || Sbjct 3338 CATGCCTCCACGAAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3397 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || ||||| ||||| || || ||||||||||| Sbjct 3398 AGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCAGG 3457 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 ||| || ||||| || ||||| || ||| || || || || || || | ||| | | Sbjct 3458 AGGGATGCCTTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATGGTATCGCTCGACT 3516 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || |||| ||||| ||||| || || || || || |||||||| Sbjct 3517 CGACCTCGAGGGTAATGGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 3568 >seq22622 Length=4454 Score = 89.7 bits (98), Expect = 2e-12 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | || || || || || || ||||| || || || || || || Sbjct 844 CATACCGCCGCGGAGACGGAGGACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTC 785 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||||||||| || || |||||||| || Sbjct 784 GGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCGGG 725 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || || || || || |||| || | || Sbjct 724 AGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTAGACTC 665 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| ||||| || || || || || ||||||||| Sbjct 664 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514745981008964