Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq25697 98.7 6e-16 seq25702 95.1 8e-15 seq18353 95.1 8e-15 seq24868 93.3 3e-14 seq22622 93.3 3e-14 seq15340 91.5 9e-14 seq23693 87.8 1e-12 seq21073 86.0 4e-12 seq17601 86.0 4e-12 >seq25697 Length=27391 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||| | ||||| || |||||| || ||||| || || | Sbjct 14994 GCCGCCGCGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 14935 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || ||||| || || || | |||||| |||||||| || Sbjct 14934 CAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGG 14875 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| ||||||||| || ||| | ||| ||||| ||| ||| Sbjct 14874 GATACCCTCCTTGTCCTGGATCTTTTG-CTTGACGTTCTCAATGGTGTCGCTCG-ACTCG 14817 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || ||||| || | ||| ||||| || |||||||| Sbjct 14816 ACCTCGAGAGTGATGGTCTTACCCGTGAGCGTCTTCACGAAGATCTGCAT 14767 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || ||||| |||||| || ||||| || || | || || || |||| ||||| || Sbjct 15197 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCAAGCTGC 15138 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| || || || | |||||| |||||||| || | ||||||||||| |||||| Sbjct 15137 TTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 15078 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| ||| || || | ||| || || || ||||| Sbjct 15077 TG-CTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 15019 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | ||| || || || ||||||||| Sbjct 15018 GAGCGTCTTGACGAAGATCTGCATG 14994 >seq25702 Length=8093 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | ||||| ||| |||||| || ||||| || || | Sbjct 2118 GCCGCCGCGCAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 2177 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | |||||| |||||||| || Sbjct 2178 GAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 2237 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| ||||||||| || ||| | || ||||| ||| ||| Sbjct 2238 AATACCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATCGTGTCGCTCG-ACTCG 2295 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || ||||| || | ||| || || || |||||||| Sbjct 2296 ACCTCGAGAGTGATGGTCTTACCCGTGAGCGTCTTGACGAAGATCTGCAT 2345 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | ||||| || |||||| || ||||| || || | Sbjct 2670 CCGCCACGCAGACGAAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2729 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || ||||| || || | |||||| |||||||| || Sbjct 2730 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 2789 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | || ||||| ||| ||| | Sbjct 2790 ATGCCCTCCTTGTCCTGGATCTTYTG-CTTCACGTTCTCGATCGTGTCGCTCG-ACTCGA 2847 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || || || || || || | || ||||| || ||||||||| Sbjct 2848 CCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 2897 >seq18353 Length=6497 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTA---AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 |||||||| | || || | ||| | ||||| || |||||| || ||||| || || Sbjct 833 GCCGCCTCCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 892 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || ||||| || || || | ||||| |||||||| Sbjct 893 GGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCCGG 952 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| ||||||||| |||||| | || ||||| ||||| Sbjct 953 GGGGATGCCCTCCTTGTCCTGGATCTTTTG-CTTAACGTTCTCGATCGTGTCCGAGCTCT 1011 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | || || || ||||| || | || || || || |||||||| Sbjct 1012 CGACCTCGAGAGTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 1063 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | |||||||| |||||| || ||||| || || | Sbjct 1065 CCGCCACGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1124 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || ||||| || || || | |||||| |||||||| || Sbjct 1125 AGGGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 1184 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || ||| | || ||||| ||| || Sbjct 1185 ATACCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCGGACGACTCGAC 1243 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || || || || | || ||||| || ||||||||| Sbjct 1244 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 1292 >seq24868 Length=8702 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | ||| | ||||| ||| |||||| || ||||| || || | Sbjct 7270 CCGCCACGCAGACGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCG 7211 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || |||||||| || || | ||||| |||||||| || Sbjct 7210 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 7151 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| ||||||||| || ||| | || ||||| ||| ||| | Sbjct 7150 ATGCCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATCGTGTCGCTCG-ACTCGA 7093 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || ||||| || | || || || || |||||||| Sbjct 7092 CCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 7044 >seq22622 Length=4454 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | ||||| || |||||| || ||||| || || | Sbjct 1296 CCGCCACGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCG 1237 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || ||||| || || | |||||| |||||||| || Sbjct 1236 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 1177 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || ||| | || ||||| |||||| || Sbjct 1176 ATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCCGAGCTCTCGAC 1118 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || ||||| || | ||| || || || |||||||| Sbjct 1117 CTCGAGAGTAATGGTCTTACCCGTGAGCGTCTTGACGAAGATCTGCAT 1070 >seq15340 Length=11482 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||| | ||||| ||| |||||| || ||||| || || | Sbjct 675 GCCGCCGCGCAGGCGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 734 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || |||||||| || || | ||||| |||||||| || Sbjct 735 CAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCCGGAGG 794 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | ||| ||||| | ||| | Sbjct 795 GATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCAATGGTGTCGCTGGACTCGA 853 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || || || || |||||||| Sbjct 854 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 902 >seq23693 Length=4026 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| || ||||| || || | || || || |||| || || || Sbjct 2910 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 2969 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | ||||| ||||| || || | ||||||||||| |||||| Sbjct 2970 TTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTT 3029 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| |||||| || || | ||| || || || ||||| Sbjct 3030 TG-CTTCACGTTCTCAATCGTGTCCGAGCTCTCGACCTCGAGGGTGATAGTCTTGCCGGT 3088 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || ||||| || ||||||||| Sbjct 3089 GAGAGTCTTCACGAAGATCTGCATG 3113 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | |||||||| |||||| || ||||| || || | Sbjct 3569 GCCGCCACGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTATGGATGTTGTAGTCCGC 3628 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | |||||| |||||||| || Sbjct 3629 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 3688 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | ||||||||||| |||||| || || Sbjct 3689 GATGCCCTCCTTGTCCTGGATCTTCTGCTT 3718 >seq21073 Length=984 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | ||||| || |||||| || ||||| || || | Sbjct 757 GCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 816 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | |||||| |||||||| || Sbjct 817 CAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 876 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||||| || || ||| | ||| || || ||| ||| Sbjct 877 GATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCAATGGTATCGCTCG-ACTCG 934 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||| || || || ||||| | || || || || |||||||| Sbjct 935 ACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 984 >seq17601 Length=6497 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| || ||||| || || | || || || |||| || || || Sbjct 5637 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCGTCCTCGAGCTGC 5578 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| || || || | ||||| |||||||| || | ||||||||||| |||||| Sbjct 5577 TTACCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTC 5518 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| |||||| || || | || || || ||||| || Sbjct 5517 TG-CTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCAAGAGTAATGGTCTTACCCGT 5459 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | ||| || || || |||||||| Sbjct 5458 GAGCGTCTTGACGAAGATCTGCAT 5435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314629148933804