Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq21899 125 5e-24 seq25702 113 3e-20 seq25697 104 2e-17 seq24868 104 2e-17 seq25321 95.1 8e-15 seq18353 95.1 8e-15 >seq21899 Length=10926 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| ||||| || | Sbjct 1790 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTTGAGTCGTCC 1849 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| ||| ||||| || ||| | || || ||||| Sbjct 1850 GACACCATCGAGAATGTCAAGCAAAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAG 1909 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || ||||| || | ||||| | | || |||||| Sbjct 1910 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTCGCGGACTACAAC 1969 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1970 ATCCAGAAGGAGTCCAC 1986 >seq25702 Length=8093 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || |||||||| || || ||||||||||| || || || | Sbjct 2345 ATGCAGATCTTCGTCAAGACGCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCGAGC 2286 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || ||||| || ||| | || || || || Sbjct 2285 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 2226 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| ||||| | | || |||||| Sbjct 2225 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCTGACTACAAC 2166 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 2165 ATCCAGAAGGAGTCCAC 2149 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||||||||| || || || | Sbjct 2896 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTCGAGTCGAGC 2837 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || || | || || || || Sbjct 2836 GACACGATCGAGAACGTGAAGCARAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 2777 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| || || | | ||| |||||| Sbjct 2776 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCGCCGACTACAAC 2717 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 2716 ATCCAGAAGGAGTCGAC 2700 >seq25697 Length=27391 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || |||||||| || || ||||||||||| || || || | Sbjct 14767 ATGCAGATCTTCGTGAAGACGCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCGAGC 14826 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||||| || ||||| || ||| | || || || || Sbjct 14827 GACACCATTGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 14886 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || |||| || || | | ||| |||||| Sbjct 14887 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 14946 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 14947 ATCCAGAAGGAGTCGAC 14963 >seq24868 Length=8702 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||||||||| || || || | Sbjct 7044 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCGAGC 7103 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || ||||| || || | || || || || Sbjct 7104 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 7163 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| || || || || |||| ||||| | | || |||||| Sbjct 7164 CAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTCGCTGACTACAAC 7223 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 7224 ATCCAGAAGGAGTCCAC 7240 >seq25321 Length=10237 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||||||||| || || || | Sbjct 9908 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGAGC 9967 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || ||||| || ||||| || ||| | || || || || Sbjct 9968 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 10027 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || |||| ||||| | | ||| |||||| Sbjct 10028 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 10087 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 10088 ATCCAGAAGGAGTCGAC 10104 >seq18353 Length=6497 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || || |||||||| || || | || Sbjct 1063 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACTCTCGAGGTCGAGAGCTCG 1004 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || ||||| || || | || || || || Sbjct 1003 GACACGATCGAGAACGTTAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 944 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || || |||| ||||| | | ||| |||||| Sbjct 943 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 884 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 883 ATCCAGAAGGAGTCGAC 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337901718743504