Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq68661 131 2e-25 seq77627 93.3 4e-14 >seq68661 Length=10605 Score = 131 bits (144), Expect = 2e-25 Identities = 366/560 (65%), Gaps = 9/560 (2%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | |||||| || ||||| || || | | |||||||| || |||||| Sbjct 2269 CCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCGGGCATGAGACCGCGTTTC 2328 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | ||| || || || ||||| || |||||||| | |||||| Sbjct 2329 TTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGATGCCCTCGACTGCGGCAAAC 2388 Query 17105 GCGATTAATCGTTCGGCGTACGT-----CGCG-TCTTTGTTACGAATCCATTTCTGCACC 17158 | | | || ||||| | || ||| || ||||| |||||| | | || Sbjct 2389 CCAACGAGGCGCTCGGCAAAGGTGTCAACGCCCTCCTTGTTG---ATCCATCGCATCGCC 2445 Query 17159 CACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTT 17218 |||||||| || | ||| | | || |||||| ||||| || || | | | || Sbjct 2446 CACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCGATGGCATTGAAGAGATGGGCCTTC 2505 Query 17219 TCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTC 17278 || |||| | | || ||||| | ||| || ||| | || ||||| |||||| Sbjct 2506 TCGACGGGGTCCTTGACGTAGGTATCCAGGAGGAGCGAGTAGGTCTCTGAGTGGATGTTC 2565 Query 17279 TCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAG 17338 || ||||| || || || || || |||||||| || || | | ||| || || | Sbjct 2566 TCGATGGCGATTTGGAAGCCATAGAAGCATCGTGCCTCGGGCACTTGCACCTCTTTCATG 2625 Query 17339 AATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATA 17398 || || | || | || || ||| ||||||||||| ||||| || || |||| | Sbjct 2626 AAGCGACCGGCCAAGTTCTCCGCCACAATGCCGTCGCTAGCGGCAAAGAATGCCAGAACG 2685 Query 17399 TGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGAT 17458 ||||| ||||| | | |||||| | || ||| |||||| ||| | || | | Sbjct 2686 TGCTTGATGAAGTGCTGTTCGTCAGCTGAGAGAGATTGCCAGTGCTTCATGTCGTCGCCG 2745 Query 17459 ATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATA 17518 | ||| || || |||| ||||| || ||| | ||||| || ||||| | ||| || Sbjct 2746 AGATCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATG 2805 Query 17519 TCATTGTATTGTATGGGGAA 17538 | ||| | |||||||| Sbjct 2806 CGCTGGTAGCGGATGGGGAA 2825 >seq77627 Length=171561 Score = 93.3 bits (102), Expect = 4e-14 Identities = 229/344 (67%), Gaps = 15/344 (4%) Strand=Plus/Minus Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 |||||| | |||||||| | |||||| || ||||| || || | | |||||||| Sbjct 137041 GCAATGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCGGGCATGAG 136982 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 || |||||||| | ||| || || | ||| || || || ||||| ||||||||||| Sbjct 136981 ACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGATACCCTCGAC 136922 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTA--CGTCG----CGTCTTTGTTACGAATCCA 17148 || || || ||| | || ||||| | |||| | || ||||| ||||| Sbjct 136921 GGCGGCGAATCCGACGAGACGCTCGGCAAAGGTGTCGAGACCCTCCTTGTT---GATCCA 136865 Query 17149 TTTCTGCA---CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 | ||| |||||||||| || | ||| | | || ||| | ||||| ||||| Sbjct 136864 ---CCGCATTGCCCACTCGGCCTTCTTCTTGACCGAGGGCACCGTCTTGATGGCGTTAAA 136808 Query 17206 TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 | | ||||||| |||| | | || || || | ||| || ||| | || Sbjct 136807 GAGATGGGCTTTTTCTACAGGGTCCTTGACGTAGGTGTCCAGGAGGAGCGAGTAGGTCTC 136748 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATC 17309 ||||| |||||||| ||||| || || || ||||| ||||||| Sbjct 136747 CGAGTGGATGTTCTCGATGGCAATTTGGAAGCCGTAGAAGCATC 136704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517034213192640