Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq68661 111 2e-19 seq71326 104 2e-17 >seq68661 Length=10605 Score = 111 bits (122), Expect = 2e-19 Identities = 365/566 (64%), Gaps = 15/566 (3%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || ||| || || || ||||| | |||||| || |||||||| || | Sbjct 2245 AGGCAGGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCG 2304 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| || |||||||| | |||||| || | | || || ||||| ||| Sbjct 2305 AGGCCGGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAG 2364 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCA------TCT 16372 || || ||||| || | ||||| | | | || || || | || || || Sbjct 2365 AAGATGCCCTCGACTGCGGCAAACCCAACGAGGCGCTCGGCAAAGGTGTCAACGCCCTCC 2424 Query 16373 TTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT 16432 || || |||||| | |||| ||||| || | || | | || |||||| Sbjct 2425 TTGTTG---ATCCATCGCATCGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCG 2481 Query 16433 ATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492 ||||| || || | | | || || || | | || ||||| | || | Sbjct 2482 ATGGCATTGAAGAGATGGGCCTTCTCGACGGGGTCCTTGACGTAGGTATCCAGGAGGAGC 2541 Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 ||| | |||||||| |||||||| ||||| || || || |||||||||||||| ||| Sbjct 2542 GAGTAGGTCTCTGAGTGGATGTTCTCGATGGCGATTTGGAAGCCATAGAAGCATCGTGCC 2601 Query 16553 TCCGCTATTTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCG 16609 || | | ||| | ||| || | || || | |||| |||||| ||| || ||| Sbjct 2602 TCGGGCACTTGCACCTCTTTCATG---AAGCGACCGGCCAAGTTCTCCGCCACAATGCCG 2658 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGA 16669 || || || ||||| || |||| | |||||| ||||| | | |||||||| || ||| Sbjct 2659 TCGCTAGCGGCAAAGAATGCCAGAACGTGCTTGATGAAGTGCTGTTCGTCAGCTGAGAGA 2718 Query 16670 ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCC 16729 ||||| | || | || | | | ||| || || || | ||||| ||| ||| Sbjct 2719 GATTGCCAGTGCTTCATGTCGTCGCCGAGATCGACCTCCTCGGCTGTCCAGAAGGAGGCC 2778 Query 16730 ACTGCCTTTTTATACATTTTCCAAAT 16755 | ||||| || ||||| | ||| || Sbjct 2779 TCGGCCTTCTTGTACATCTCCCAGAT 2804 >seq71326 Length=3810 Score = 104 bits (114), Expect = 2e-17 Identities = 304/465 (65%), Gaps = 5/465 (1%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||||||| || || || ||||| | ||||||||| |||||| || | Sbjct 2299 AGGCAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCA 2240 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || || ||||| | |||||| || | |||| || || || || || Sbjct 2239 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAAGAGCCGGAGAA 2181 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC---ATCTTT 16374 ||| || ||||| || | || || |||| | || || | | | || | | | | Sbjct 2180 GAAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC 2121 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || | |||||| | |||| ||||| || | || | | || || || || Sbjct 2120 CTTGCAAATCCAGCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCAT 2061 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 |||| || | | || || || ||| | | || || || || || | Sbjct 2060 GGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGA 2001 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 ||||||||| ||||| |||||||| || || ||||| || || |||||||| || ||||| Sbjct 2000 GTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1941 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | ||| |||||| || || | ||||||||||| ||||| || || || Sbjct 1940 GGGCACTTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCT 1881 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC 16659 || || || || |||| | |||||| ||||| | || ||||| Sbjct 1880 GGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC 1836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510909071431360