Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq69527 122 7e-23 seq79045 113 4e-20 seq78417 109 5e-19 seq12680 104 2e-17 seq77962 102 7e-17 seq76656 100 2e-16 seq78127 91.5 1e-13 seq62930 91.5 1e-13 seq36372 89.7 4e-13 seq65911 84.2 2e-11 >seq69527 Length=538 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| || ||||| ||||| || || || || ||||| Sbjct 309 AGCACCAAGTGGAGGGTGGACTCCTTCTGNATGTTGTAGTCAGCGAGCGTGCGGCCGTCC 250 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | || || | ||||||||| || | ||| |||||||| Sbjct 249 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 190 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||||| ||||| | ||| ||||| | || ||| || | ||||| ||| Sbjct 189 TGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTGGACTCAACCTCGAGCGTAATAGTC 130 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||| ||||| || || ||||| Sbjct 129 TTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 98 >seq79045 Length=6779 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | || | ||| |||||||| || ||||| ||||| ||| Sbjct 3432 CCGCCACGCAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 3491 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||| ||||| || | || || | |||||||||| || Sbjct 3492 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGA 3551 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || ||||| | | | || || || ||| Sbjct 3552 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCGACC 3611 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||||||||| | || ||||| || || ||||| Sbjct 3612 TCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 3658 >seq78417 Length=4549 Score = 109 bits (120), Expect = 5e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 || ||||| | ||| || | || | ||| |||||||| || ||||| ||||| || ||| Sbjct 1050 CCACGCAGGCGGAGGACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGG 1109 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071 || || ||||||| ||||| ||||| || | ||||| | ||||||||| || | | Sbjct 1110 GTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGCGGGATG 1169 Query 21072 CCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCC 21131 || |||||||| ||||| || ||||| | | | || || || ||| || Sbjct 1170 CCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCAATSGTGTCCGAGGACTCGACCTCG 1229 Query 21132 ACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 | ||||||||||||||||| | || || || || || |||||| Sbjct 1230 AGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 1274 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| ||||| || || ||||||| ||||| ||||| Sbjct 768 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 827 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | |||||||||| ||| | ||| |||||||| |||||| || ||| Sbjct 828 GCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 887 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || | | ||| || | || || ||||| || || | || Sbjct 888 ACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGCGTGATCGTCTTTCCCGTAAGGGTC 947 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 948 TTGACGAAGATCTGCAT 964 >seq12680 Length=217 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| || ||||| ||||| ||||| || | ||||| Sbjct 77 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCC 136 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||||||| | || || | |||||||||| ||| | || |||||||| Sbjct 137 TCGAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 196 Query 21084 GCGATCTTTTGTTTCAC 21100 |||||| || ||||| Sbjct 197 TGGATCTTCTGCTTCAC 213 >seq77962 Length=8127 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 20984 CTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATA 21043 |||||| || ||||| ||||| || ||||| || ||||||| ||||| ||||| || | Sbjct 6512 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 6453 Query 21044 AATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTG 21103 || || | |||||||||| ||| | || |||||||| |||||| || || || | Sbjct 6452 GATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTT 6393 Query 21104 GCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 | | ||| || | ||| || | ||| ||||||||||| || | || ||||| Sbjct 6392 CTCAATAGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGAC 6333 Query 21164 AAATATTTGCATTTTG 21179 || |||||||| ||| Sbjct 6332 GAAGATTTGCATGTTG 6317 >seq76656 Length=3208 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 20982 GACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCA 21041 |||||||| || ||||| ||||| || ||||| || ||||||| ||||| ||||| || Sbjct 253 GACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCG 312 Query 21042 TAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACC 21101 | ||||| | ||||||||| || | ||| |||||||| ||||| || ||||| Sbjct 313 AAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 372 Query 21102 TGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTG 21161 | | | || || || ||| || | ||||||||||||||||| | || || Sbjct 373 TTCTCAATSGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTC 432 Query 21162 ACAAATATTTGCATT 21176 || || || |||||| Sbjct 433 ACGAAGATCTGCATT 447 >seq78127 Length=10502 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 20982 GACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCA 21041 |||||||| || ||||| ||||| || || || || ||||||| ||||| ||||| || Sbjct 1 GACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCG 60 Query 21042 TAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACC 21101 | || || | ||||||||| || | ||| |||||||| |||||| || ||||| Sbjct 61 AAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 120 Query 21102 TGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTG 21161 | | | || || || ||| || | ||||| ||||||||||| | || || Sbjct 121 TTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATAGTCTTGCCGGTGAGGGTCTTC 180 Query 21162 ACAAATATTTGCATT 21176 || || || |||||| Sbjct 181 ACGAAGATCTGCATT 195 >seq62930 Length=430 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| || || || || | ||||| ||||| ||||| Sbjct 183 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTACGGCCATCCTCGAGCTGCTTGCCG 124 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | ||||| | |||||||||| ||| | ||| |||||||| |||||| || || Sbjct 123 GCGAAGATAAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 64 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || | ||| || || | | ||| || | || ||||||||||| || Sbjct 63 ACGTTCTCGATCGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCAGT 11 >seq36372 Length=127 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| || ||||| ||||| |||| ||| || | ||| Sbjct 120 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCC 61 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || ||||| ||||| || | || || | |||||||||| ||| | ||| |||||||| Sbjct 60 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 2 >seq65911 Length=1339 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||||||||||| || ||||| ||||| || Sbjct 219 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 278 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCC 21062 ||||| || ||||||| ||||| ||||| ||| |||| || | |||||| ||| Sbjct 279 AGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCC 332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421852396542368