Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq79005 170 4e-37 seq69516 96.9 7e-15 seq77627 91.5 3e-13 >seq79005 Length=17376 Score = 170 bits (188), Expect = 4e-37 Identities = 405/609 (67%), Gaps = 5/609 (1%) Strand=Plus/Minus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 || || || || ||| || || ||| || || || | ||||||||| || || Sbjct 1601 TTTAAGACCCTCGAGCGGTCTTACCTCTTCCGGATCGACGACAAGATCGTCGAGCGCCCC 1542 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || ||||| |||||| ||| |||| ||| || Sbjct 1541 CAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGTCATC 1482 Query 248953 GAGACGTACACCGGAATGAGTGAAC-GCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 ||||| ||| | | ||| ||| | || || ||||||||||| |||||||| Sbjct 1481 GAGACCTACGACTTGCTCTCGCAACAGCTCT-TCACCCACGCCACACCGACCCTCTTCAA 1423 Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071 |||||| ||| | | ||||| |||||||| || || ||||| | || ||||| Sbjct 1422 CGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGACTC 1363 Query 249072 TGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGG 249131 |||| || || || |||||||| || ||| || || || || | || ||||| Sbjct 1362 GATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGGCGG 1303 Query 249132 AATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGG 249191 ||||| || | | | | |||||| || |||||||| || || || || Sbjct 1302 TATCGGCGTCGCTGCCCACCGCATCCGCGCCTCCAACTCGTACATTCGCGGCACCAACGG 1243 Query 249192 GGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAA 249251 | | ||| |||| || | || || || | ||||||| | | | || | Sbjct 1242 CACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACCGCCCGCTACGTCGA 1183 Query 249252 CCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGA 249308 ||||| ||| || || ||||| | || ||||| ||| | || |||||||||||| Sbjct 1182 CCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGTGGCACGCCGA 1123 Query 249309 TATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGA 249368 || || || || |||| | || |||||| ||||||| ||| | | || || || Sbjct 1122 CATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGA 1063 Query 249369 CCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGA 249428 ||||||||||||||||||| || ||||| | |||||| |||||| || | | |||||| Sbjct 1062 CCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAGTCTGGCGGCGA 1003 Query 249429 TTGGACGCT 249437 ||| |||| Sbjct 1002 CTGGTCGCT 994 >seq69516 Length=7675 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||||| | ||||| || ||||| || |||||||| ||||||||||| Sbjct 3216 TGCCCGCCCTACAAGCTCATCATCCTTGATGAGGCCGATTCCATGACGCCCGACGCGCAG 3275 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||||||||| || | || |||| |||| || ||||| || ||| || | ||| Sbjct 3276 GCCGCCCTCCGACGCATCATCGAGAACTACTCTCGAGTCACGCGCTTCTGCTTGATCTGC 3335 Query 254322 AACTACGT 254329 |||||||| Sbjct 3336 AACTACGT 3343 >seq77627 Length=171561 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 |||||||| | ||||| || || |||| ||||| | || || || |||||||| Sbjct 145125 CGAAAGGGAGCCTTCGCGATCTACCTGGAGCCCTGGCATTCGGACATCTTTGAGTTCCTC 145066 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 || | || |||||| ||||||| ||| | | || || ||||||||||||| |||| Sbjct 145065 GATCTCAAGAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGACCTCTTCTACGCCCTG 145006 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 |||||| | || | |||||| |||||| |||| | ||| | ||| |||| Sbjct 145005 TGGGTCCCGGATCTATTCATGAAGCGCGTCGAGGCTGGTGGCTACTGGTCGCT 144953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072678886705664