Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq71326 122 1e-22 >seq71326 Length=3810 Score = 122 bits (134), Expect = 1e-22 Identities = 369/561 (66%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || |||||||| ||||||||||| | || || | |||||| || | || Sbjct 2296 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2237 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 2236 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 2178 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCAT- 36332 || || || || || || ||| | || || | ||| | || ||| || | Sbjct 2177 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 2118 Query 36333 --GTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 ||||| | || ||||| ||||||||||| || || | |||| ||||| || | Sbjct 2117 GCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGG 2059 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | ||||| | || || || | ||||||||| || || || || | || | Sbjct 2058 CCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGAGT 1999 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 |||||||||| || ||||| || || || || || || |||||||| || | ||||||| Sbjct 1998 ACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1939 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | || ||||| | || || | || | || || || || || || |||| Sbjct 1938 GCACTTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCTGG 1879 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTATTC 36628 | || || || |||| || || || || || | || ||| | | |||| || | | Sbjct 1878 CGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCG-TCGTTGTTGAGCGAAGCC 1820 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || | || || || | ||| || || || | ||||| || || ||||| ||| Sbjct 1819 CAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCC 1760 Query 36689 TTTTTATACATATTCCAGATG 36709 || || ||||| | ||| ||| Sbjct 1759 TTCTTGTACATCTCCCAAATG 1739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657522459456320