Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq79045 100 3e-16 seq76579 100 3e-16 seq77627 93.3 4e-14 >seq79045 Length=6779 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||||| || ||||| || || ||||| || ||| | Sbjct 3432 CCGCCACGCAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 3491 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||| || ||||| |||| || || ||||| || ||||| Sbjct 3492 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGA 3551 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || || | | || | ||||| | || ||| ||| Sbjct 3552 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCGACC 3611 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||||||||||| || || ||||| || |||||| Sbjct 3612 TCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATA 3659 >seq76579 Length=2215 Score = 100 bits (110), Expect = 3e-16 Identities = 169/243 (70%), Gaps = 9/243 (4%) Strand=Plus/Minus Query 152739 TTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCG 152798 ||||| ||||| | || || | ||||||||||||||||||||||| ||||| || Sbjct 236 TTGGCGGCCGGCCGGGTGCGCAGGTAGTACATGCCCGTCTTGAGGCCCTTGCGCCAGGCG 177 Query 152799 TACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGGCCATGTACACGTTAAACGAT 152858 || | ||||| ||| | | ||| || || | || ||| ||||||| ||||| | ||| Sbjct 176 TAGAAGTGCATCGAGGTGAGCTTGGCAAACGAGGGCTCGCCCATGTAGACGTTGAGCGAC 117 Query 152859 TGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTCGATCATGAATTTTCCGTTG 152918 || || || || || | || | || || ||||||||||| |||| || | Sbjct 116 TGGCTCTGGTCGATGTAGGCCGAGCGGTCGGCGGCCATGTCGATGATGA------CG-CG 64 Query 152919 TTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTAATGTTGTCGGGAATTTCATCT 152978 || | |||| ||||| | ||| |||| ||||| || |||| ||| || || || || Sbjct 63 CTGGGGCAGC--TCCCATACCGTCTTGTAGAGCTTCTTGATGTCGTCAGGGATCTCGTCG 6 Query 152979 ATG 152981 ||| Sbjct 5 ATG 3 >seq77627 Length=171561 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 ||||||||||| || || || |||||| | ||||| | | || || | | | || Sbjct 138701 GAGGCCGTCGAGATCGAGAAGGAGTTTGTCACGGAGTCGCTCCCGGTGGCGCTCATCGGT 138760 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTG-TTGATGCA 52955 ||||||||| | | |||||| ||||||| |||||||| || ||| | ||| | | ||| Sbjct 138761 ATGAACGCGGGCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTGGCA 138820 Query 52956 GCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATC 53015 | ||| | | ||| |||| || || |||||||| | | ||| | || || Sbjct 138821 CTTGGGTGCGAC-AAACACTACAACGCCACGAACCCCTTCCCCTGGATGGAGCTGATCTC 138879 Query 53016 GCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA 53060 ||||||||||| || ||||| |||||| | || | |||||||| Sbjct 138880 ACTCGAGGGCAAGACCAACTTCTTCGAGCGCCGGATTGGCGAGTA 138924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495573839161600