Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq68661 179 5e-40 seq71326 158 2e-33 >seq68661 Length=10605 Score = 179 bits (198), Expect = 5e-40 Identities = 401/599 (67%), Gaps = 6/599 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| |||||| |||||||| | || || || |||||||| || | ||| Sbjct 2248 CAGGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGG 2307 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || || || || ||||| || ||||| || || || || |||||| Sbjct 2308 CCGGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAG 2367 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG---GCGCTGT-CATG 50135 || || || ||||||||||| |||| || | ||| || | || ||| | | || Sbjct 2368 ATGCCCTCGACTGCGGCAAACCCAACGAGGCGCTCGGCAAAGGTGTCAACGCCCTCCTTG 2427 Query 50136 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193 | ||||| ||||| ||||||||||| || || | |||| |||||| |||||| Sbjct 2428 TTGATCCATCGCATCGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCGATGGCA 2487 Query 50194 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 || ||||||| | || || || || || || ||||| | | || || Sbjct 2488 TTGAAGAGATGGGCCTTCTCGACGGGGTCCTTGACGTAGGTATCCAGGAGGAGCGAGTAG 2547 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 | || || || ||||| || ||||| || || || || ||||| |||| ||||||| Sbjct 2548 GTCTCTGAGTGGATGTTCTCGATGGCGATTTGGAAGCCATAGAAGCATCGTGCCTCGGGC 2607 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 | ||||| ||| | || || | || || || || ||| || ||||| || || Sbjct 2608 ACTTGCACCTCTTTCATGAAGCGACCGGCCAAGTTCTCCGCCACAATGCCGTCGCTAGCG 2667 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA 50433 ||||| || |||| || || || || || || | ||||| | || || | ||| Sbjct 2668 GCAAAGAATGCCAGAACGTGCTTGATGAAGTGCTGTTCGTCAGCTGAGAGAGATTGCCAG 2727 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 | || || || | | ||| || || || ||||||| || || ||||| ||||| Sbjct 2728 TGCTTCATGTCGTCGCCGAGATCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCGGCCTTC 2787 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || ||||| | ||||||| || || |||| ||||| | || || | ||| || || Sbjct 2788 TTGTACATCTCCCAGATGCGCTGGTAGCGGATGGGGAACAGCACGAAGCGATTAGGGTT 2846 >seq71326 Length=3810 Score = 158 bits (174), Expect = 2e-33 Identities = 389/581 (67%), Gaps = 12/581 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||||||||||||||| | || || || |||||| || | || Sbjct 2296 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2237 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 2236 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 2178 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG----CTGTCAT 50134 ||| || || || ||||| ||| | | || | ||| | | || | | | Sbjct 2177 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 2118 Query 50135 GTA--TCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 | | |||| | || ||||| ||||||||||| || || | |||| || || |||| Sbjct 2117 GCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGG 2059 Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 | ||||| | || || || | ||||||||| || || ||||| | || | Sbjct 2058 CCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGAGT 1999 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||||||||| || ||||| || || || ||||| || |||||||| || | ||||||| Sbjct 1998 ACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1939 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 | |||||||| | || || |||| | || || || || || || |||| Sbjct 1938 GCACTTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCTGG 1879 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTC 50430 | || || || |||| || || || || || || || ||| | | |||| || | | Sbjct 1878 CGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCG-TCGTTGTTGAGCGAAGCC 1820 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | || || || | ||| || || || | ||||| || || ||||| ||| Sbjct 1819 CAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCC 1760 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 || || ||||| | ||| ||| || || |||| ||||| Sbjct 1759 TTCTTGTACATCTCCCAAATGCGCTGGTAGCGGATGGGGAA 1719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717559078598720