Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq77627 100 3e-16 seq71326 89.7 5e-13 seq68661 82.4 8e-11 >seq77627 Length=171561 Score = 100 bits (110), Expect = 3e-16 Identities = 162/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || |||||||| ||||| || |||||| ||||||| | | || ||||| | | || Sbjct 138701 GAGGCCGTCGAGATCGAGAAGGAGTTTGTCACGGAGTCGCTCCCGGTGGCGCTCATCGGT 138760 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTG-TTGTTGCA 50750 |||||||| | | | |||||| |||||||||||||||| || ||| | || | || ||| Sbjct 138761 ATGAACGCGGGCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTGGCA 138820 Query 50751 GCTGGG-ACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTTTATGAATAACATA 50808 |||| | || ||| |||| || | |||| |||||||| || | ||| | || Sbjct 138821 CTTGGGTGCGAC--AAACACTACAACGCCACG-AACCCCTTCCCCTGGATGGAGCTGATC 138877 Query 50809 TCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA 50855 || | |||||||| || ||||| ||||| | || | ||||| || Sbjct 138878 TCACTCGAGGGCAAGACCAACTTCTTCGAGCGCCGGATTGGCGAGTA 138924 >seq71326 Length=3810 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || || ||||| ||||| || ||||| ||||||| | | |||||||| | | ||| Sbjct 2358 GAGGCTGTCGAGATCGAGAAGGAGTTCGTCACGGAATCGCTGCCCGTGGCTCTTATTGGC 2417 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGA-CAGATTGTTGTTG-- 50748 |||||||| || | |||||| ||||||| ||||| || || || | | || | || | Sbjct 2418 ATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGGCTTCTCGTCGCT 2477 Query 50749 --CAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACA 50806 | |||| ||||| | |||| || || ||||| || |||| ||| | | Sbjct 2478 CTCGGCTGTGACAAGC-----ACTACAACTCATCCAACCCGTTCCCGTGGATGGAGCTTA 2532 Query 50807 TATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA 50855 | ||| | || ||||| || ||||| |||||| | || || ||||| || Sbjct 2533 TTTCGCTTGAAGGCAAGACCAACTTCTTCGAACGCCGCGTTGGCGAGTA 2581 >seq68661 Length=10605 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || |||||||| ||||| || |||||| ||||||| | | || ||||| | | ||| Sbjct 2186 GAGGCCGTCGAGATCGAGAAGGAGTTTGTCACGGAGTCACTCCCGGTGGCGCTCATCGGC 2127 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGAC 50736 |||||||||| | | |||||| ||||||| ||||||| || ||| Sbjct 2126 ATGAACGCAGGCCTCATGTGCCAGTACATCGAGTTTGCCGCCGAC 2082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506513419071360