Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01-
07] 79,048 sequences; 66,025,675 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq77627 100 3e-16
seq71326 89.7 5e-13
seq68661 82.4 8e-11
>seq77627
Length=171561
Score = 100 bits (110), Expect = 3e-16
Identities = 162/227 (71%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691
|| |||||||| ||||| || |||||| ||||||| | | || ||||| | | ||
Sbjct 138701 GAGGCCGTCGAGATCGAGAAGGAGTTTGTCACGGAGTCGCTCCCGGTGGCGCTCATCGGT 138760
Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTG-TTGTTGCA 50750
|||||||| | | | |||||| |||||||||||||||| || ||| | || | || |||
Sbjct 138761 ATGAACGCGGGCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTGGCA 138820
Query 50751 GCTGGG-ACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTTTATGAATAACATA 50808
|||| | || ||| |||| || | |||| |||||||| || | ||| | ||
Sbjct 138821 CTTGGGTGCGAC--AAACACTACAACGCCACG-AACCCCTTCCCCTGGATGGAGCTGATC 138877
Query 50809 TCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA 50855
|| | |||||||| || ||||| ||||| | || | ||||| ||
Sbjct 138878 TCACTCGAGGGCAAGACCAACTTCTTCGAGCGCCGGATTGGCGAGTA 138924
>seq71326
Length=3810
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/229 (69%), Gaps = 10/229 (4%)
Strand=Plus/Plus
Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691
|| || ||||| ||||| || ||||| ||||||| | | |||||||| | | |||
Sbjct 2358 GAGGCTGTCGAGATCGAGAAGGAGTTCGTCACGGAATCGCTGCCCGTGGCTCTTATTGGC 2417
Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGA-CAGATTGTTGTTG-- 50748
|||||||| || | |||||| ||||||| ||||| || || || | | || | || |
Sbjct 2418 ATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGGCTTCTCGTCGCT 2477
Query 50749 --CAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACA 50806
| |||| ||||| | |||| || || ||||| || |||| ||| | |
Sbjct 2478 CTCGGCTGTGACAAGC-----ACTACAACTCATCCAACCCGTTCCCGTGGATGGAGCTTA 2532
Query 50807 TATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA 50855
| ||| | || ||||| || ||||| |||||| | || || ||||| ||
Sbjct 2533 TTTCGCTTGAAGGCAAGACCAACTTCTTCGAACGCCGCGTTGGCGAGTA 2581
>seq68661
Length=10605
Score = 82.4 bits (90), Expect = 8e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691
|| |||||||| ||||| || |||||| ||||||| | | || ||||| | | |||
Sbjct 2186 GAGGCCGTCGAGATCGAGAAGGAGTTTGTCACGGAGTCACTCCCGGTGGCGCTCATCGGC 2127
Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGAC 50736
|||||||||| | | |||||| ||||||| ||||||| || |||
Sbjct 2126 ATGAACGCAGGCCTCATGTGCCAGTACATCGAGTTTGCCGCCGAC 2082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506513419071360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |