Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq71326 170 3e-37 seq79005 145 1e-29 seq68661 131 2e-25 seq77627 118 2e-21 seq76579 114 2e-20 >seq71326 Length=3810 Score = 170 bits (188), Expect = 3e-37 Identities = 401/590 (68%), Gaps = 24/590 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | || || ||||||||| |||||||| ||||| ||||||| || Sbjct 1716 CTGTTCCCCATCCGCTACCAGCGCATTTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTC 1775 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||||||||| || | ||| || | | |||| ||| | || Sbjct 1776 TGGACCGCCGAGGAGGTCGATTTGAGCGCCGACATGAAGCACTGGGCT--TCGCTCAAC- 1832 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 ||| || ||||| || || |||| | |||||||||| |||| | |||||| Sbjct 1833 --AAC-GA-CGAGAAGCACTTCATCAAGCACGTGCTGGCCTTCTTCGCCGCCAGCGATGG 1888 Query 125171 AATCGTCAACGACAATCTGT-TGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGT 125229 |||||| ||| || ||| || | || ||| | || || | || |||| | Sbjct 1889 CATCGTCGCCGAGAACCTGGCTGGC-CGCTTCATGAAGGAAGTGCAAGTGCCCGAGGCGC 1947 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 ||||| ||||| ||||| ||| || |||||| | ||||||||||||||||| | Sbjct 1948 GCTGCTTCTACGGCTTCCAGATCGCTATCGAGAACATCCACTCGGAAATGTACTCGCTCC 2007 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGAC 125348 | || |||| ||| || |||||| | || || || ||||| || || || Sbjct 2008 TCATCGACACCTACGTTAAAGATCCG-ATCGAGAAGGACCACCTCTTCCGGGCCATGGAG 2066 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGAT---CGATGACGAC 125405 || ||||| || | || ||||| | |||| || || ||||| | | || | Sbjct 2067 ACTGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCCATGCGCTGGATTTGCAAGGAGGGT 2126 Query 125406 AAGTCTT--CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-T 125462 ||| | | | |||| | || | | |||||||| || |||||||||||||| | Sbjct 2127 --GTCGAGACCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCT 2184 Query 125463 TCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 ||| | || ||| ||||||| ||||||||||||||||| || |||||||| || | Sbjct 2185 CCGGCTCTTTCTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCC 2243 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||| |||||| |||| || |||||||| || ||||| |||||||| Sbjct 2244 TTCAGCAACGAGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2293 >seq79005 Length=17376 Score = 145 bits (160), Expect = 1e-29 Identities = 376/572 (66%), Gaps = 6/572 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| | | | || || || || ||||| | | ||||| | | | || Sbjct 1250 ACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACCGCCCGC 1191 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||| || || ||||| | ||| |||| | || || ||| Sbjct 1190 TACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGTGG 1131 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||| | ||||||||| | ||| | || ||| ||| || ||| || Sbjct 1130 CACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACCGC 1071 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | ||| | || || | || ||| | || || | ||||||||||||||| | Sbjct 1070 GCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAGTCT 1011 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 || ||| ||||| || | |||||| || | | ||||| |||| || | |||||| Sbjct 1010 GGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTGGGGC 951 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG---A 97163 | |||||||| | ||||| | |||||||| |||||||| || | || Sbjct 950 AAGGAGTTTGAAGAGAAGTATGAGCGCTACGAGCTGGAGGGCCG---CGCCCGCCGGGTG 894 Query 97164 GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 ||| | || | || || ||| || ||| | | | ||| | |||||||| || || Sbjct 893 GTCAAGGCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGCACGCCC 834 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 ||||| ||||||||||| || || |||| ||||| | ||| ||||||| ||| Sbjct 833 TACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCACCTGGGCACGATC 774 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTT 97343 || || || ||||||||||| | | ||||| |||| || ||||| ||| || Sbjct 773 CAGTCGTCGAACCTGTGCACGGAGGTCATCCAGTACACCTCGCCCGACGAAGTGGCCGTG 714 Query 97344 TGCGTTCTGGCATCGGTCAATCTGCCCAAGTT 97375 ||| ||||| ||| || ||||||||||| Sbjct 713 TGCAACCTGGCCTCGATCGCCCTGCCCAAGTT 682 >seq68661 Length=10605 Score = 131 bits (144), Expect = 2e-25 Identities = 388/588 (66%), Gaps = 18/588 (3%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | || || ||| ||||| |||||||| ||||| |||||||||| Sbjct 2828 CTGTTCCCCATCCGCTACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 2769 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||||||||||| | | ||| || | | ||| | ||| | || Sbjct 2768 TGGACAGCCGAGGAGGTCGATCTCGGCGACGACATGAAGCACTGGCAATCTCTCTCAGCT 2709 Query 125115 GA--AACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 || ||| ||| | || || |||| || |||| |||||||||| ||| || | Sbjct 2708 GACGAAC--AGC---ACTTCATCAAGCACGTTCTGGCATTCTTTGCCGCTAGCGACGGCA 2654 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT 125232 | || || || || || ||| ||||| || | || |||| | Sbjct 2653 TTGTGGCGGAGAACTTGGCCGGTCGCTTCATGAAAGAGGTGCAAGTGCCCGAGGCACGAT 2594 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| || || ||||||||| || |||||| | ||||| || | ||||| || Sbjct 2593 GCTTCTATGGCTTCCAAATCGCCATCGAGAACATCCACTCAGAGACCTACTCGCTCCTCC 2534 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA--CACATGCTCTTTAACGCAATCGACAC 125350 | || | ||| | || || | || || | ||| ||||| || || ||||| || Sbjct 2533 TGGATACCTACGTCAAGGACCC-CGTCGAGAAGGCCCAT-CTCTTCAATGCCATCGAAAC 2476 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 |||||| || | || ||||| | |||| ||| || |||||| | | || | Sbjct 2475 GGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCGATGCGATGGATCAACAAGGAGG-GCG 2417 Query 125411 TTCGTAC----GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 || || ||||| | || || | || ||||| || |||||||||||||| |||| Sbjct 2416 TTGACACCTTTGCCGAGCGCCTCGTTGGGTTTGCCGCAGTCGAGGGCATCTTCTTCTCGG 2357 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | || || ||||||| ||||||||||| ||||| ||||||||||| || | | Sbjct 2356 GCTCCTTCTGTT-CCATCTTCTGGCTCAAGAAACGCGGTCTCATGCCCGGCCTCGCCTTC 2298 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | || || ||||||||||| ||| || |||||| Sbjct 2297 TCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCACGCCGAGTTTGCC 2250 Score = 114 bits (126), Expect = 2e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 |||||||||| || |||||||| || | | | | | ||||| |||||||||||| | Sbjct 953 TCTACAAGACCGTGTGGGAGATCTCACAGCGCGTCA-TCATCGACATGGCTGCCGACCGC 1011 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 | |||||| |||||||| || ||| |||| || || | ||||| ||||||| | Sbjct 1012 TCGGCCTACATCGACCAGAGCCAGTCGCTCAACCTCCACATGGCCGACCCCACCTTCCCC 1071 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 |||| || || ||||| ||||| ||| ||||||||||||||| ||||||||||| Sbjct 1072 AAGCTGACGTCAATGCACTTCTACGCTTGGCGCAAGGGCCTCAAGACCGGCATGTACTAC 1131 Query 98217 CT 98218 || Sbjct 1132 CT 1133 >seq77627 Length=171561 Score = 118 bits (130), Expect = 2e-21 Identities = 233/338 (69%), Gaps = 9/338 (3%) Strand=Plus/Plus Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 ||||| ||||| |||||||| || |||||| | |||||||| | ||||| || Sbjct 136706 TGCTTCTACGGCTTCCAAATTGCCATCGAGAACATCCACTCGGAGACCTACTCGCTCCTC 136765 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACAC 125350 | |||| ||| | || || | ||| | ||| ||||||||||| ||| | || Sbjct 136766 CTGGACACCTACGTCAAGGACCCTGTAGAAAAAGCCCAT-CTCTTTAACGCCATCAAGAC 136824 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 |||||| || | || ||||| | |||| || ||||||||| | | || ||| Sbjct 136825 GGTGCCCTCGGTCAAGAAGAAGGCCGAGTGGGCAATGCGGTGGATCAACAAGGAGG-GTC 136883 Query 125411 TTCGTAC----GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 | || ||||| | || || | |||||||||||| ||||| |||||||| |||| Sbjct 136884 TCGACACCTTTGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGTATCTTCTTCTCGG 136943 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | || || ||||||| ||||||||||| ||||| ||||||||||| || | | Sbjct 136944 GCTCCTTCTGTT-CCATCTTCTGGCTCAAGAAACGCGGTCTCATGCCCGGCCTCGCCTTC 137002 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTG 125563 |||||| | || || ||||||||||| || || Sbjct 137003 TCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCATTG 137040 Score = 96.9 bits (106), Expect = 5e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 98038 TCTACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 |||||||||| || |||||||| || | | | | | ||||| | || |||||| | Sbjct 143898 TCTACAAGACCGTGTGGGAGATCTCGCAGCGCGTCA-TCATCGACCTAGCCGCCGACCGC 143840 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 | ||||||||||||||| || ||| | || || || | ||||| ||||||| | Sbjct 143839 TCGGCCTACATTGACCAGAGCCAGTCGCTGAACCTCCACATGGCCGATCCCACCTTCCCC 143780 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 | || || || ||||| ||||| ||| ||||||||||||||| ||||||||||| Sbjct 143779 AAGCTCACGTCCATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTAC 143720 Query 98217 CT 98218 || Sbjct 143719 CT 143718 >seq76579 Length=2215 Score = 114 bits (126), Expect = 2e-20 Identities = 164/228 (72%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC--TGATCGATATGGCTGCCGACAG 98095 |||||||||| || |||||| | || ||| || | ||||| ||||| |||||| | Sbjct 35 TCTACAAGACGGTATGGGAGCTGCC--CCAGCGCGTCATCATCGACATGGCCGCCGACCG 92 Query 98096 AGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA--- 98152 | |||||| |||||||| || ||| |||| | ||| | | ||||||| | | Sbjct 93 CTCGGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTTGC 152 Query 98153 CAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTA 98212 || | | || ||||| ||||| ||||| ||| |||||||||||||||||||||||| Sbjct 153 CAAGC---TCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACGGGCATGTA 209 Query 98213 CTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 ||| ||| | || | ||||| |||| || || | || ||||| || Sbjct 210 CTACCTGCGCACCCGGCCGGCCGCCAACGCGATCCAGTTCACGGTCGA 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740326959404480