Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq73528 96.9 3e-15 seq72028 96.9 3e-15 seq71031 96.9 3e-15 >seq73528 Length=2831 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 99652 TAGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCG 99711 ||||| || |||| |||||||||||| ||||||||||| || |||||| |||||| Sbjct 2144 TAGATCTTGCGGAGTGAGGGCGGGATCGGTACGCCGCGGTTGACAGAGAAGGCAAGGCCG 2203 Query 99712 TGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 ||||| || || | | || ||||||||| ||||||||||| || || || || Sbjct 2204 TGGGCTTGACCCTCGTTGAAGTAGGGGTCTTGGCCCAGGATTACTACTTTCAC 2256 >seq72028 Length=2666 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 99652 TAGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCG 99711 ||||| || |||| |||||||||||| ||||||||||| || |||||| |||||| Sbjct 582 TAGATCTTGCGGAGTGAGGGCGGGATCGGTACGCCGCGGTTGACAGAGAAGGCAAGGCCG 641 Query 99712 TGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 ||||| || || | | || ||||||||| ||||||||||| || || || || Sbjct 642 TGGGCTTGACCCTCGTTGAAGTAGGGGTCTTGGCCCAGGATTACTACTTTCAC 694 >seq71031 Length=2639 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 99652 TAGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCG 99711 ||||| || |||| |||||||||||| ||||||||||| || |||||| |||||| Sbjct 2058 TAGATCTTGCGGAGTGAGGGCGGGATCGGTACGCCGCGGTTGACAGAGAAGGCAAGGCCG 1999 Query 99712 TGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 ||||| || || | | || ||||||||| ||||||||||| || || || || Sbjct 1998 TGGGCTTGACCCTCGTTGAAGTAGGGGTCTTGGCCCAGGATTACTACTTTCAC 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440463547500480