Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq69527 118 2e-21 seq66934 118 2e-21 seq24034 104 5e-17 seq77962 100 7e-16 seq76656 98.7 2e-15 seq66207 96.9 8e-15 seq78127 95.1 3e-14 seq78417 91.5 3e-13 >seq69527 Length=538 Score = 118 bits (130), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || || || Sbjct 294 GTGGACTCCTTCTGNATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 235 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || || || || ||||| |||||| || Sbjct 234 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTC 175 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||||| | || ||||| || ||||||||||| ||||| || || Sbjct 174 ACGTTCTCGATGGTATCGCTGGACTCAACCTCGAGCGTAATAGTCTTGCCAGTCAGCGTC 115 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 114 TTGACGAAGATCTGCAT 98 >seq66934 Length=1683 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 298 AAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTC 239 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || |||||||| || || | ||| || || || || || || || || || Sbjct 238 CTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 179 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| |||||| || || || || | ||||||||| | || ||||| || |||||||| Sbjct 178 CTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGCGTAATAGT 119 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || || |||||||| Sbjct 118 CTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 86 >seq24034 Length=175 Score = 104 bits (114), Expect = 5e-17 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || || || ||||| || || || | ||| || || || || || || || Sbjct 165 CCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCC 106 Query 104462 TTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 || ||||| ||||| ||||| || || || | ||||||||| | || ||||| || || Sbjct 105 TTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGCGT 47 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||||||||| || || || || || |||||||| Sbjct 46 AATAGTCTTACCAGTCAGGGTCTTGACGAAGATCTGCAT 8 >seq77962 Length=8127 Score = 100 bits (110), Expect = 7e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| ||||| || || ||||| | || || | ||||| Sbjct 6848 AAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTC 6789 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || ||||| || | ||| || || || || || || || ||||| Sbjct 6788 CTCAAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTATC 6729 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||||| || || || | ||| || | || ||||| || ||||||| Sbjct 6728 CTGAATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGACGACTCGACCTCGAGAGTAATAG 6670 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| || | || || || || || ||||| Sbjct 6669 TCTTACCCGTCAAGGTCTTGACGAAGATTTGCAT 6636 >seq76656 Length=3208 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/203 (72%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || || ||||| || || ||||||| || || | ||||| || || || || ||||| Sbjct 253 GACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCG 312 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTAC 104484 || || || | ||| || || || || || || || || ||||||||||| ||| || || Sbjct 313 AAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TTCAC 371 Query 104485 ATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543 || || | || || | ||| || ||||| || ||||| ||||| || || || || | Sbjct 372 GTTCTCAATSGTGTC-CGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCT 430 Query 104544 TTACAAATATCTGCATT-TTGTG 104565 | || || ||||||||| ||||| Sbjct 431 TCACGAAGATCTGCATTGTTGTG 453 >seq66207 Length=742 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || || || Sbjct 240 GTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 181 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || || || || || || || ||||| ||||| ||||| Sbjct 180 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 121 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | ||| || | ||| || ||||| || ||||||||||| ||||| || | Sbjct 120 -ACGTTCTCAATGGTGTC-CGAGGACTCGACCTCGAGCGTAATAGTCTTGCCAGTCAGGG 63 Query 104541 TTTTTACAAATATCTGCAT 104559 | || || || |||||||| Sbjct 62 TCTTGACGAAGATCTGCAT 44 >seq78127 Length=10502 Score = 95.1 bits (104), Expect = 3e-14 Identities = 146/202 (72%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || || ||||| || || ||||||| || || | ||||| || || || || || || Sbjct 1 GACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCG 60 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTAC 104484 || || || | ||| || || || || || || || || ||||| ||||| ||||| || Sbjct 61 AAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-AC 119 Query 104485 ATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543 || || | ||| || | ||| || ||||| || ||||||||||| || || || || | Sbjct 120 GTTCTCAATGGTGTC-CGAGGACTCGACCTCGAGCGTAATAGTCTTGCCGGTGAGGGTCT 178 Query 104544 TTACAAATATCTGCATT-TTGT 104564 | || || ||||||||| |||| Sbjct 179 TCACGAAGATCTGCATTGTTGT 200 >seq78417 Length=4549 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || || || Sbjct 1077 GTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCG 1136 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || || || || || || || ||||||||||| ||| || Sbjct 1137 GCGAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 1195 Query 104482 TACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | || || | ||| || ||||| || ||||| ||||| || || || | Sbjct 1196 CACGTTCTCAATSGTGTC-CGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGG 1254 Query 104541 TTTTTACAAATATCTGCATT 104560 | || || || ||||||||| Sbjct 1255 TCTTCACGAAGATCTGCATT 1274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150232260821984