Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq78896 159 5e-35 seq73757 150 3e-32 >seq78896 Length=18045 Score = 159 bits (176), Expect = 5e-35 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 1640 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 1699 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| ||| | ||| | ||| | ||| Sbjct 1700 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACTCGCGGTGTGCTTAAGGTTTTC 1759 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||| || || ||| |||||||||||| | |||||||| Sbjct 1760 CTCGAGAACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCTCGCAGGAAGACTGTT 1819 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 || ||||||| ||||||| || | || | || ||||||| Sbjct 1820 ACTGCCATGGACGTCGTCTACGCTCTCAAGAGGCAGGGCCGTA 1862 >seq73757 Length=10297 Score = 150 bits (166), Expect = 3e-32 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 2835 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 2776 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 2775 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTC 2716 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || || ||| || ||||||||| | ||||||||| Sbjct 2715 CTCGAGAACGTTATCCGCGACGCCGTCACCTACACTGAGCACGCTCGCAGGAAGACTGTC 2656 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || || || ||||| Sbjct 2655 ACGGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGCCG 2615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79002925860264